Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03666 ATGGAGATCGATTATTTAAGTTCGAAAAGTTTTCGTAATGATTATCATCAAGGGGAAAATAGAAATCATGATGATGACGACGACGACAATCAGCCTATTGAAACAGTGAATGAAAGACAAGAACAATTCAGAAGAAGAAGCAGAGCAGGAGCTTGTAGTGAAAGACCTAAAAGAGTTCAAAGTGATTCAAAAATTGCTCCGAAAAAGGATAATAAACCGTTGGTAGTAGAATTTCAAAGCAAAAAAGCACTGATGAATAAAGCCCAAGTATTCTGCCTAAACTCAAAATATCCTTGCTTTATACTAGAAATGCAAAGATCTTATATTTCACAAGATCTACTGCGTATACCAATCGAGTTTTCGAGAAAGAACTTACATGGGTTAGAGGGAAAAGCCAAAATTGGAGTTAATGGTAACATGAGATGGGATATGGAGTTAAGATTTTGTGGTGATAGAGCTACTTTCAATGCTGGTTGGAGAAATGTTTGCAACGATTTTGGCTTAAAATTTGGTGATGTTTGTGTATTTGAGATGATTAAGGACACTCCACTTTTCTTCAACTTTTTTCTCATCAGACCCAAACAGCAACCAATCAACCTTTGCCACCAAAACTTGCCAGACCATCATCAAAGCCTCCCTCAGCTAAACAAAGTGCAAGGGCAAACCAGTCAATCTAGAAAAAGAAAAAGAAGCAGTGATGGAACTTCTTTCAGAATCCGTGACAGAGCTCCCAACATGCAGGAAAATCAATTTATCCTTGAAATTAAAGATTATCACCTTAGTGGATCTACTGTGTTCATACCAAACGGATTTTGTCGTAGGCACAAAGATTGTCTTGGAAAACTTGTGAATTTGAAATTTGGAGAAATTTTACGGCCAGTGAAATTGTTAGCACGCGGTGCATTTTCTGAAGGATGGTTGAATTTTGCAAAAGAATGCAAATTGAATACTGGTGACTTTTGTTCCTTCGAACTCGTTGATGACCAAAATCTTATCTTTGAAGTTTCAACTAAAAAATCAAAATAG 1026 0.3635 MEIDYLSSKSFRNDYHQGENRNHDDDDDDNQPIETVNERQEQFRRRSRAGACSERPKRVQSDSKIAPKKDNKPLVVEFQSKKALMNKAQVFCLNSKYPCFILEMQRSYISQDLLRIPIEFSRKNLHGLEGKAKIGVNGNMRWDMELRFCGDRATFNAGWRNVCNDFGLKFGDVCVFEMIKDTPLFFNFFLIRPKQQPINLCHQNLPDHHQSLPQLNKVQGQTSQSRKRKRSSDGTSFRIRDRAPNMQENQFILEIKDYHLSGSTVFIPNGFCRRHKDCLGKLVNLKFGEILRPVKLLARGAFSEGWLNFAKECKLNTGDFCSFELVDDQNLIFEVSTKKSK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03666 341 CDD B3_DNA 255 336 IPR003340 GO:0003677
Aip10g03666 341 CDD B3_DNA 98 185 IPR003340 GO:0003677
Aip10g03666 341 SUPERFAMILY DNA-binding pseudobarrel domain 93 189 IPR015300 -
Aip10g03666 341 SUPERFAMILY DNA-binding pseudobarrel domain 246 333 IPR015300 -
Aip10g03666 341 SMART B3_2 251 336 IPR003340 GO:0003677
Aip10g03666 341 SMART B3_2 100 192 IPR003340 GO:0003677
Aip10g03666 341 MobiDBLite consensus disorder prediction 217 239 - -
Aip10g03666 341 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 192 - -
Aip10g03666 341 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 219 338 - -
Aip10g03666 341 Gene3D - 75 194 IPR015300 -
Aip10g03666 341 Gene3D - 231 340 IPR015300 -
Aip10g03666 341 ProSiteProfiles B3 DNA-binding domain profile. 99 194 IPR003340 GO:0003677
Aip10g03666 341 PANTHER B3 DOMAIN-CONTAINING 1 192 - -
Aip10g03666 341 PANTHER B3 DOMAIN-CONTAINING 219 338 - -
Aip10g03666 341 MobiDBLite consensus disorder prediction 1 66 - -
Aip10g03666 341 Pfam B3 DNA binding domain 101 187 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03666 Aip-Chr10 134740347 134743589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03666 257 337 REM Transcription Factor Family AT1G49480 30.952 1.01e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03666 B3 1.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03666 - - ahf:112786607 594.349