Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03589 ATGTCTTCCTCCATCAATAATCATCATCCTCAACCTTCTCTTCCTTCACAAAGGTTATTAGGCAAAGTAGCACTGGTTACCGGTGGAGCCTGTGGCATTGGAGAAAGCATCACTCGCATTTTTCACATCCATGGTGCAAAAATTTGCATAGCTGATATTCAAGATGATCTTGGAAACAAGGTTTGTGAATCCCTTGGTGGTGAAGAAAATGTTTGTTTCTTCCATTGTGACGTGGCATCGGAGGATGACGTCAGCCGTGCGATCGACTTCACCGTCGCAAAATTTGGCACTGTTGACATTATAGTCAACAATGCCGGAATTTCAGGCTCGCCTTGTCCTGATATCCGCCATGCAGATTTATCAGAATTCGAAAAAGTATTCGACGTTAACGTAAAAGGAGTATTTCACGGAATGAAACACGCCGCTAGAATAATGATCCCGCGAAAAACGGGATCAATTATTTCTCTAGCGAGCGTGTCTAGTACTACAGGGGGCCTTGGGCCTCATGCATACACGGGCTCAAAACACGCAGTTTTGGGCCTTACAAAAAACGTTGCGGCCGAATTAGGAAAATATGGAATAAGAGTGAATTGTGTGTCGCCGTATGGCGTTCTTACAGATCTAGCTCTAGCTCACTTGCCGGAGGATGAGAGGACGGAGGATGCTAAGACCGGTTTTCGCGATTTTGTTGCCAGAAATGCTAACTTACAAGGGGTGGAATTTACCAAAGATGATGTAGCTAATGCTGTGCTCTTCTTGGCTAGTGATGAAGCAAGGTATATAAGTGGAGCTAATTTGATGCTTGATGGAGGCTTCACTAGTGTTAATCACTCACTCAAAGTGTTTAGAAATTTTTTTTTACCAAAGTCCGAACCCGGCCCATTACTGAAAGAGGTTCTTCTCTCTCATTTTTGTTTCTCTAATCTCTTCCTTCAATTTCCGCTTCCTCTTCTTCTATCTTCAAACTACCATTACAGCAAGATACAAAAGGATATGGCACCTCAATTGGTAGCAGCCTCCTGTGGCTTATCTTCTTCACATCTTTGCCATCCTCATGTTCCTCCTATCAGGAGTAGAGTTTTGAGTCCAAAAGGCACTGCAATCAACTTGAAAAAGAATCATGGCATGTCTCTTCCAGCCATTTCTTTGGGAAGAACGTATATCCCATTGTTGACTGCTGTTCCAAGGAAAACAGTTAAGCCATCACTGACTGCTGCTTCAGGAAAAACATATGCCACACTGACAGCTGATTCATCCACACTATTTTCCGGTGACCTAGATCATCTCACACTCAAAGCTCCTACATCTCGTGGATCCAATTCTAAGATCCGTGGTCAAGCATACATATATCATTCTTCTGGCTTTCGAATCCCTGCAAATGCAGAGAAGCCAGAATGGTGGTGGAGGACACTATGTTGTATTCCCTATCTAATTGCATTGCAGATGTCTGCAACTGGGTTTTATCTTGAACCTTTACTCGAAAAATTCCCACTTTTCCAAAATCTGATCTACTATATCCCCGGAGCCGTCAACAGACTACCAACCTGGTTCCCCATACTCTATTGCTATTTGGCCATCATTGGAGTTGTAAAGAACAGTAGATTTCCCCTTCTCTTCAGGTACCATGTAATGATGGGAATGCTACTCGAAATCGCGCAGCAGATATTCTGGGTCACGTGCAACTTCGTGCCACTTATACACTTCAAAGGGACACTTGGTATGTATTATTGGGGTGGTGTGGCTTTGGCATATATTCTCATATTGGGAGAGTGTATAAGGTGTGCACTTCTGGGTACCTTTGTGAAGATCCCTGTTATTAGTGAATCAGCATTCATTCATTCTCTATATGGTTTAGGATTAAGGTAG 1866 0.4314 MSSSINNHHPQPSLPSQRLLGKVALVTGGACGIGESITRIFHIHGAKICIADIQDDLGNKVCESLGGEENVCFFHCDVASEDDVSRAIDFTVAKFGTVDIIVNNAGISGSPCPDIRHADLSEFEKVFDVNVKGVFHGMKHAARIMIPRKTGSIISLASVSSTTGGLGPHAYTGSKHAVLGLTKNVAAELGKYGIRVNCVSPYGVLTDLALAHLPEDERTEDAKTGFRDFVARNANLQGVEFTKDDVANAVLFLASDEARYISGANLMLDGGFTSVNHSLKVFRNFFLPKSEPGPLLKEVLLSHFCFSNLFLQFPLPLLLSSNYHYSKIQKDMAPQLVAASCGLSSSHLCHPHVPPIRSRVLSPKGTAINLKKNHGMSLPAISLGRTYIPLLTAVPRKTVKPSLTAASGKTYATLTADSSTLFSGDLDHLTLKAPTSRGSNSKIRGQAYIYHSSGFRIPANAEKPEWWWRTLCCIPYLIALQMSATGFYLEPLLEKFPLFQNLIYYIPGAVNRLPTWFPILYCYLAIIGVVKNSRFPLLFRYHVMMGMLLEIAQQIFWVTCNFVPLIHFKGTLGMYYWGGVALAYILILGECIRCALLGTFVKIPVISESAFIHSLYGLGLR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03589 621 Pfam Enoyl-(Acyl carrier protein) reductase 28 273 - -
Aip10g03589 621 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 274 IPR036291 -
Aip10g03589 621 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 283 - -
Aip10g03589 621 Pfam Chloroplast import apparatus Tic20-like 443 610 IPR005691 -
Aip10g03589 621 CDD secoisolariciresinol-DH_like_SDR_c 18 273 IPR045309 GO:0016616
Aip10g03589 621 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Aip10g03589 621 PRINTS Glucose/ribitol dehydrogenase family signature 23 40 IPR002347 -
Aip10g03589 621 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Aip10g03589 621 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Aip10g03589 621 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Aip10g03589 621 PRINTS Glucose/ribitol dehydrogenase family signature 236 256 IPR002347 -
Aip10g03589 621 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Aip10g03589 621 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 IPR002347 -
Aip10g03589 621 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Aip10g03589 621 PANTHER XANTHOXIN DEHYDROGENASE 1 283 - -
Aip10g03589 621 Gene3D - 11 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03589 Aip-Chr10 134250054 134258489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03589 355 619 Chloroplast and Mitochondria Gene Families AT4G03320 44.195 8.43e-71 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03589 K09841 - ahf:112782565 605.134