Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03571 atgcttaaattatgtcaagtggagcaaagttgtcactccaagaaaatatggaagACCGCTGAGGACTCTAGTTTGGATTTTGTGTCTTGGATTCGTTCTAACCTCAACAAAAATGAGTTTCTCTTTGCAGCGGCCTTTTGGTGGATTTGGAGGGATAGGAACAATGACATCTTCCATCAAGATGATCCATGGAGTAAGGAGAAAATTGTTCACTTAGTTCAACATGCTGCTCGCGATTTCTCTAAGGTTGTTACCAACCAAAAACATATTATTCCTTCCTCTTTGCAATATAACTGGGAACCACCTCCAATGAATGTCTGTAAAGTGAACTGCGATGCAAGCGTTTTTGAAAATGGGCAATTAGCGGGCTTTGGATGTATTATTAGAGACAGCATGGGAATTTGGATGAAAGGTTGTTCTGCCAGTATACTTCTTTCTAGTGTTCTCTCTTGTGAGCTTCAtgctatttggagagggcttgttatggcttgggattgcgagtgtaaagaggtcatatgtgaaactgataatcttgaTGCATTTCTTCTTGTTTCGCGAGGCACAACCAGCATGATTACGAATGACTCTGATCTGCTTGGCAAAATCAAAAAGATGCTTCAGCGCAATTGGACAGCTACTTTAGTGCTCATCCAGCGTACAGCAAACAGAGCGGCTGATTTAATGGCTAAGACTGCTGCTTTAAACAAGCAGCCTCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCCAGGTCCTGATTTCCACCGTGGACCCCCGCCTCCTCCGCAGATGATGCGTCAGCCTTCTGCTGGTTCCTCCACTGAATTTCACCACCCCGCTCCCGGAGGCCCTCCTCCTCACTACGACGGTCATGGCGATAGTCACGGTGCAAAAAGGATAAGAAAGCTTACTCAACGGAAAGCAGTTGATTACACAAGCACCGTCGTGCGGTATATGCAGGTTCGAATGTGGCAGAGGGATTCGAGGGATAGGACGGTATTGCAACCTACCCCAGCCGCAGCAATTGATATGTTGCCAGCTGCTGGGTACCCGGACAATCCATCTACCAGCTTTGCTGCCAAGTTTGTTCATACCTCTTTAAATAAAAATCGATGTCCAATTAACAGGGTTGTGTGGACTCCAACGGGTCGGCGTCTTATCACAGGTTCTCAGACTGGTGAATTTACCCTCTGGAATGGACAATCTTTTAATTTTGAAATGATTCTTCAGGCTCACGACCAAGCAATTAGATCCATGGTTTGGAGTCACAATGACAACTGGATGGTCTCGGGTGATGATGGTGGTGCAATAAAATATTGGCAGAACAACATGAATAATGTTAAAGCCAACAAATCTGCTCATAAGGAATCAGTCCGTGACTTAAGTTTCTGTAGAACAGATTTAAAGTTCTGTTCGTGCTCTGATGATACCACAGTTAAAGTATGGGATTTTGCAAGATGTCAAGAAGAGCGTTCTTTAACTGGCCATGGTTGGGATGTTAAGAGTGTTGACTGGCATCCTACAAAATCTCTATTAGTATCAGGTGGCAAGGACCAGCTTGTAAAACTCTGGGATGCTAAAACAGGAAGAGAGCTTTGCTCATTTCACGGCCATAAAAGTACTGTACTCTGTGTCAAATGGAATCAAAATGGCAACTGGGTGCTGACAGCCTCAAAGGATCAAATAATAAAGCTTTATGACATAAGGGCTATGAAGGAGCTTGAATCTTTCCGTGGACATCGGAAGGATGTAACTGCTTTGGCGTGGCATCCGTTTCATGAAGAGTACTTTGTCAGTGGAAGTTACGATGGTGCAATATTCCATTGGCTTGTTGGGCATGATACACCGCAAATTGAAATTCCAAATGCTCATGATAATAATGTGTGGGACCTTGCATGGCATCCTATCGGATATCTTCTCTGCAGTGGTAGCAGTGATCACACAACAAAGTTTTGGTGTCGGAATAGGCCAGGAGACACTGGTCGTGATAGATTTAACATGGGTATGCAAGGATATGCTGAGCAAACTCCTGTAGCTGGTCGAGTTGGTGGTAATTTTCCTGTACCTGAGGGTCCAACAACCCCAGGACCATTTGCCCCTGGGTTGACTCGAAATGAGGGTACAATTCCAGGTGTTGGAGTTGCAATGCCCCTGGCCATTCCTTCGCTTGATACACCTCAGGGAGACCAGCAATCTCATCCAGTATCAATGGGTGCCCCTCCTCTTCCCCCAGGTCCACATCCTTCTCTTCTTGCGTCCAATCAACAGCAACCGTACCAGCAGAATCCTCAGCAGATGCCACAACATCAACACCAGGGAATGCCACATCAGATGGGTCCAATTCCTATGCATCCAAATATGCCACAGCTACAACATCCTTCCCATTCACCCATGCTCCCTCATCCACATATGCCTCGCCCCCCAAGCCAAATGCCCCCTCTTGGAATGGCCGGATCCATGCCAATGATTTCTTCGGTGCCTCCATCTCATCCAAAGCCAATGTCAGGTCCTATGGGGATGCAAGGTGCAATGAATCAGATGGGGCCTCCTATGCCACAAGGTCCCTATGTTGGCATGAATCAAATGCATTCAGGATCCATGCCCAATAGTGGAGGGCCTCCTATTGGAGGCTTTCCAGGCAACATGCCTAACATGCAGGCACCATCAAATGCTGGTTATGGTCAAGGTGGTTCATTCAACCGACCTCAAGGTGGACAAATGCCAATGATGCAAGGGTATAATCCTTACCAGTCTGGAAATCAATCTGGGCTTCCTCCAAACGCACAACCTGGTCATGGCTCACACACTCAAATGCCTCAATAG 2823 0.4478 MLKLCQVEQSCHSKKIWKTAEDSSLDFVSWIRSNLNKNEFLFAAAFWWIWRDRNNDIFHQDDPWSKEKIVHLVQHAARDFSKVVTNQKHIIPSSLQYNWEPPPMNVCKVNCDASVFENGQLAGFGCIIRDSMGIWMKGCSASILLSSVLSCELHAIWRGLVMAWDCECKEVICETDNLDAFLLVSRGTTSMITNDSDLLGKIKKMLQRNWTATLVLIQRTANRAADLMAKTAALNKQPPPPPPPQQQQQPGPDFHRGPPPPPQMMRQPSAGSSTEFHHPAPGGPPPHYDGHGDSHGAKRIRKLTQRKAVDYTSTVVRYMQVRMWQRDSRDRTVLQPTPAAAIDMLPAAGYPDNPSTSFAAKFVHTSLNKNRCPINRVVWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDAKTGRELCSFHGHKSTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSYDGAIFHWLVGHDTPQIEIPNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDTGRDRFNMGMQGYAEQTPVAGRVGGNFPVPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLAIPSLDTPQGDQQSHPVSMGAPPLPPGPHPSLLASNQQQPYQQNPQQMPQHQHQGMPHQMGPIPMHPNMPQLQHPSHSPMLPHPHMPRPPSQMPPLGMAGSMPMISSVPPSHPKPMSGPMGMQGAMNQMGPPMPQGPYVGMNQMHSGSMPNSGGPPIGGFPGNMPNMQAPSNAGYGQGGSFNRPQGGQMPMMQGYNPYQSGNQSGLPPNAQPGHGSHTQMPQ 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03571 940 CDD RNase_H_like 109 230 IPR044730 -
Aip10g03571 940 MobiDBLite consensus disorder prediction 886 940 - -
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 493 530 - -
Aip10g03571 940 Pfam Reverse transcriptase-like 110 232 IPR002156 GO:0003676|GO:0004523
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 535 569 - -
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats profile. 493 534 IPR001680 GO:0005515
Aip10g03571 940 SUPERFAMILY Ribonuclease H-like 106 241 IPR012337 -
Aip10g03571 940 ProSitePatterns Trp-Asp (WD) repeats signature. 512 526 IPR019775 -
Aip10g03571 940 Gene3D - 524 660 IPR015943 GO:0005515
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 609 IPR001680 GO:0005515
Aip10g03571 940 CDD WD40 371 652 - -
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 441 IPR001680 GO:0005515
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 577 609 - -
Aip10g03571 940 MobiDBLite consensus disorder prediction 719 785 - -
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats profile. 621 652 IPR001680 GO:0005515
Aip10g03571 940 SUPERFAMILY WD40 repeat-like 363 652 IPR036322 GO:0005515
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 441 - -
Aip10g03571 940 Gene3D - 106 233 IPR036397 GO:0003676
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 451 483 - -
Aip10g03571 940 PANTHER WD40 REPEAT PROTEIN 286 931 IPR045245 GO:0031124
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats profile. 451 492 IPR001680 GO:0005515
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 399 IPR001680 GO:0005515
Aip10g03571 940 SMART WD40_4 613 653 IPR001680 GO:0005515
Aip10g03571 940 SMART WD40_4 570 610 IPR001680 GO:0005515
Aip10g03571 940 SMART WD40_4 355 399 IPR001680 GO:0005515
Aip10g03571 940 SMART WD40_4 486 525 IPR001680 GO:0005515
Aip10g03571 940 SMART WD40_4 402 441 IPR001680 GO:0005515
Aip10g03571 940 SMART WD40_4 528 567 IPR001680 GO:0005515
Aip10g03571 940 SMART WD40_4 444 483 IPR001680 GO:0005515
Aip10g03571 940 MobiDBLite consensus disorder prediction 749 772 - -
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 576 IPR001680 GO:0005515
Aip10g03571 940 MobiDBLite consensus disorder prediction 233 297 - -
Aip10g03571 940 MobiDBLite consensus disorder prediction 235 266 - -
Aip10g03571 940 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 621 652 - -
Aip10g03571 940 Pfam WD domain, G-beta repeat 530 567 IPR001680 GO:0005515
Aip10g03571 940 Pfam WD domain, G-beta repeat 573 609 IPR001680 GO:0005515
Aip10g03571 940 Pfam WD domain, G-beta repeat 621 652 IPR001680 GO:0005515
Aip10g03571 940 Pfam WD domain, G-beta repeat 407 440 IPR001680 GO:0005515
Aip10g03571 940 Pfam WD domain, G-beta repeat 452 483 IPR001680 GO:0005515
Aip10g03571 940 Pfam WD domain, G-beta repeat 488 525 IPR001680 GO:0005515
Aip10g03571 940 Gene3D - 363 523 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03571 Aip-Chr10 134098982 134108588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03571 361 628 Miscellaneous Gene Families AT5G08390 25.185 5.96e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03571 K15542 - gmx:100788493 1165.21