Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03569 ATGTCCGCGGGCGATTCCTTCGCGAACCACAAGCTATGCGGTTTCCTCTGTGCCGTTCTCAGAGTCACTCCTCCAATTCGATCTGAAGGATATAGTTCCACTTCTTTGTTCAACGACCAATGCGAGATCTTCGGCGACGGTTTCCGGTCCCGGAATGGCGTCGTTTTGTGTCCGTTGGGGACTGGTTCGGATTCAGGACAATGCGAAGGAGGAGAGAGTAGTAGCAGTGGTGGTAGCGGCGGATCCTCTTCGAAAGGGAGGAGGATGAGTAAGGTTGGGATGGTGAATGGGAGCATTAGCGTGGTTCACCAGCTTCACGCTCTGGTGAGCCGCAACTGCATCACGAGTGATGCTCGAGTGGTGTGGGTGGAGGTCGGTGAAGGGAAGGAGGTGAGGGCGGTGGTACTCATCGATGTCTACGTTACAATTGAGCTCTGGAGTGGCTGGCAGTTCCCACGGTCGGGGCCGGTTGCCGGCGCTTTCTTTAGCCACCTGAGCTGTGATTGGGACAAGAGAAGTTCGATACTTTCTGATCCAGACTATTTTATGAAGACTTTTGGGACAAGCGACAACATCTGGAACCTTTCTGACTGTCATGTACTTGGTTGCAAGCTCCATTGTGGTGCGAGTGATTCTTCAAAGAAAAGACTATTTGAACTTCATGAAATATTTAAGATGGTACCTGGTGTTGGAAAACAGCAGAAATCTAACAATTCAAGGATAGTACCTATTGATAATGCTTTCGGATCTGGGATTTGGGAGATATCTGATGATATTTTAACCAAAATTTTAGCTTGCCTTGGTCCAATGGACCTCACTAGGGTATCTGCAACATGTCGACATCTCAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTCTTTCCTCATCAGCAGACTGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATTTTGAACAGTTGCTACATCCCTTATATATTGCTCTCTTAACTGAAGATGGCTTTAGTTTCCACGTGAATACTGTATCTGGGGAAATAATTTCTGAGGAAACTCCCACCATCAGAGATTTTCGCGGAGGGATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAACACTTTCTCTTATTGTGAAGACACAAGGTACTCTGGCAGATCCACCAGACGGGGCAGAAGTAATCTGGTGTCAACATAATGGTAACCAGAAATGTGGTTATTATGAGATCAGTGGTAAGAGGGATGTGGCCCAAGATACTAGTAAGAATAATGAGAACCATGACTACTCCTCAAAAAGAGCCAGATTGATGAATCCTGCTGGGAAAATTACTACACAAAATGACGTAATTTCTGCAGAAGCTATGAAATCGCCTGTAGATGCATCCTTTGAAGAATCGGTGCCTGCCAGTCGAAGCACTAGGAGTCTCAGTTGCGTCAAGAAAAAACTGAATCTCTCCTTTGAAGATGAAGACTTGATTTTCAAGGAAAGAAGAGTTGGTATGAGATCACATAAAAGAAATCATGCATCAGATATTGCATCATGTGTACCACCAAATAAACTAGTTAATGCTTCATATGGACGTGGGAAAAGTTCCAAGTTGCGTGGGAATCCTAAAGTTGATTGTTTGGAGTCCAATGATACATGGATTCAGTGCGATGCATGTCACAAATGGCGAAAGCTTGCAGATAATATTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTCATATCAGAGTTGTAGTGTCCCAGAACAACATTTCCAGAATAGCTGTAAGATAACATACTTGCCAGGATTTCACTTGAAAGGAACTCTTGGGGGTTTGGAACAAAATATTTCCTTTTTCATTAGTGTTCTTAAGGAGCACTGTACATTGCTGAATTCTCAGTCAAAGAAGGCTCTGACTTGGTTGGTTAAACTTTCAGCAGATCGGATTGCAGGAATGGAAACACATGGCATACGGGGGCCCATTTTGAACTCTTGTAGTACGTCTAATGGATATTTTAATGCATTCCACAAAATATTTCAAGCATTTGGCCTTGTAAAGAGAGTAGAGAAAGGTATATGCAAGTGGTACTACCCACAAAATCTTAGCAATTTGACTTTTGATGTGAAAGCACTTGGCATGGCTCTGCGTGAGCCATTAGATTTTGTGAGGCTATACTTGTCAAGAGCAACCCTCATAGTTGTTCCAGCAAATCTGGTTGATCATTGGAAAACACAAATAGAGAAGCATGTAACTCCTGGTCAATTGCGGGTGTATGTTTGCGTTGATCAGCGGAAGCCATCTGCACACTGTTTAGCTTGGGATTATGATGTTGTTATAACTACCTTTAGCCGTTTAAGTGCAGAGTGGAACCCACGTAAGAGGAGTGTTTTGATGCAAGTACATTGGTTTAGGATAATTTTAGACGAAGGTCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCAATGATGGCTTCAAATCGTTGGATACTAACAGGTACTCCAACACCTAACACCCCTAACAGCCAACTCCCACATCTACAACCTCTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAGAAGTCGTGGGAAGCTGGCATCCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCGCGCCTGTTGCATTTAATTCAGAAGTGCATGATTAGTGCAAGAAAGGTAGACTTGCAAAACATTCCGCCATGCATTAAGAAAGTTGTTTATGTGGATTTCAGTGAGGAACATGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAATGGAAATTTCGAAGTGCAACCATAAAGAATGTGAGGCTGTCTTGCTGTGTTGCTGGGCATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATTTTAGCACAAAGTGGTCTTGATCCTACTTCGGCGGAGTATAGCTCCATAAGATATAGTCTCCTATTTGGTGGTAATTGTGTCAGATGCAAGGAGTGGTGCCGCCTTCCTCTCATTACACCTTGTCGCCATCTATTGTGCCTTGATTGTGTTTCTTTAGACAATATGAAGTGTACATACCCTGGATGTGGTAAACCATACGAAATGGAGAGTCCTGATTCATTGGCCCGACCAGAAAATCCTAACCCAAAGTGGCCTGTGCCCAAAGATCTTATTGAGTTGCAGCCTTCGTATAAGCAGGATGATTGGGATCCTGATTGGCAATCAACTTCTAGTAGTAAAGTCTCCTATCTTGTCCAGAGGTTAAAAGCTTTGCAAGAAATCAATGAAGAGATGGGTTTCTGCAAAGCCAAGAGCAATCATGAGCTTGATACTGAGAATAGCTTCCCTATGCATATGAGAGATGGTGGATCATTATTCCAGGAATGTTCTATAAGAAGCACTATGACCAATATGAAACCTGACAAAGTTTTGATATTTTCCCAGTTTCTGGAGCATATACATGTCATTGAACAGCAGTTGACCATTGCTGGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCAAGCAGCAAGAAGAAGTCATTAGCCACATTCCAGCATGATTCAAGTTGTATGGCACTTGTGATGGATGGAAGCGCTGCATTGGGGCTTGACCTGAGTTTCGTTACGCATGTATTTTTGATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGCCGTGCCCATCGCATGGGTGCTTCTCGTCCTATTCATGTGGAAACCTTGGCAATGCGTGGTACCATTGAAGAACAAATGGTGGAGTATTTACAGGATGCTGATAAATGTAGAAGATTTCCTAGTCAAGATGCTCCCAAATCTGTAGATGATAGCGGGGCACGAGGACACCGTTCATTACATGATTTTGCTGAAAGTAGTTATCTACTCAAACTTAGATTTGTATATACTAATCCAGAAACCCTAAAAGGCACTTTTGCCTTGAAATTGGATTATTCAGTGTTTGAGTTGGAATTGTGCACTGAATAG 4080 0.4299 MSAGDSFANHKLCGFLCAVLRVTPPIRSEGYSSTSLFNDQCEIFGDGFRSRNGVVLCPLGTGSDSGQCEGGESSSSGGSGGSSSKGRRMSKVGMVNGSISVVHQLHALVSRNCITSDARVVWVEVGEGKEVRAVVLIDVYVTIELWSGWQFPRSGPVAGAFFSHLSCDWDKRSSILSDPDYFMKTFGTSDNIWNLSDCHVLGCKLHCGASDSSKKRLFELHEIFKMVPGVGKQQKSNNSRIVPIDNAFGSGIWEISDDILTKILACLGPMDLTRVSATCRHLRSLAASVMPCTKLNLFPHQQTAVEWMLHRERNFEQLLHPLYIALLTEDGFSFHVNTVSGEIISEETPTIRDFRGGMFCDEPGLGKTVTTLSLIVKTQGTLADPPDGAEVIWCQHNGNQKCGYYEISGKRDVAQDTSKNNENHDYSSKRARLMNPAGKITTQNDVISAEAMKSPVDASFEESVPASRSTRSLSCVKKKLNLSFEDEDLIFKERRVGMRSHKRNHASDIASCVPPNKLVNASYGRGKSSKLRGNPKVDCLESNDTWIQCDACHKWRKLADNIMANSSAAWFCSMNTDPSYQSCSVPEQHFQNSCKITYLPGFHLKGTLGGLEQNISFFISVLKEHCTLLNSQSKKALTWLVKLSADRIAGMETHGIRGPILNSCSTSNGYFNAFHKIFQAFGLVKRVEKGICKWYYPQNLSNLTFDVKALGMALREPLDFVRLYLSRATLIVVPANLVDHWKTQIEKHVTPGQLRVYVCVDQRKPSAHCLAWDYDVVITTFSRLSAEWNPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISMMASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGILRPFEAEMEEGRSRLLHLIQKCMISARKVDLQNIPPCIKKVVYVDFSEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDILAQSGLDPTSAEYSSIRYSLLFGGNCVRCKEWCRLPLITPCRHLLCLDCVSLDNMKCTYPGCGKPYEMESPDSLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRLKALQEINEEMGFCKAKSNHELDTENSFPMHMRDGGSLFQECSIRSTMTNMKPDKVLIFSQFLEHIHVIEQQLTIAGIKYAGMYSPMHSSSKKKSLATFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMVEYLQDADKCRRFPSQDAPKSVDDSGARGHRSLHDFAESSYLLKLRFVYTNPETLKGTFALKLDYSVFELELCTE 1359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03569 1359 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 729 858 IPR014001 -
Aip10g03569 1359 CDD DEXDc_SHPRH-like 722 899 - -
Aip10g03569 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 800 1303 IPR027417 -
Aip10g03569 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 378 IPR027417 -
Aip10g03569 1359 SMART helicmild6 1182 1264 IPR001650 -
Aip10g03569 1359 MobiDBLite consensus disorder prediction 66 86 - -
Aip10g03569 1359 Gene3D - 1082 1301 IPR027417 -
Aip10g03569 1359 Pfam SNF2-related domain 300 956 IPR000330 GO:0005524|GO:0140658
Aip10g03569 1359 Gene3D - 712 902 IPR038718 -
Aip10g03569 1359 Gene3D - 540 594 - -
Aip10g03569 1359 SMART ultradead3 293 869 IPR014001 -
Aip10g03569 1359 ProSitePatterns Zinc finger RING-type signature. 1036 1045 IPR017907 -
Aip10g03569 1359 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1158 1310 IPR001650 -
Aip10g03569 1359 ProSiteProfiles Zinc finger CW-type profile. 540 591 IPR011124 GO:0008270
Aip10g03569 1359 MobiDBLite consensus disorder prediction 64 89 - -
Aip10g03569 1359 Pfam Helicase conserved C-terminal domain 1165 1264 IPR001650 -
Aip10g03569 1359 PANTHER OS01G0952200 PROTEIN 84 1323 - -
Aip10g03569 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 898 IPR027417 -
Aip10g03569 1359 Pfam F-box domain 255 289 IPR001810 GO:0005515
Aip10g03569 1359 Pfam CW-type Zinc Finger 545 588 IPR011124 GO:0008270
Aip10g03569 1359 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 84 1323 - -
Aip10g03569 1359 SMART fbox_2 255 295 IPR001810 GO:0005515
Aip10g03569 1359 SUPERFAMILY F-box domain 251 288 IPR036047 GO:0005515
Aip10g03569 1359 CDD SF2_C_SNF 1167 1274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03569 Aip-Chr10 134088462 134095301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03569 728 1284 RAD5 or RAD16-like Gene Family AT5G22750 25.926 3.98e-43 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip10g03569 SNF2_N 2.2e-97 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03569 - - adu:107471940 2663.26