Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03564 ATGAGTATGTTAGGCCTCACAGACTTAGTTTTCATAGCTCCAAATCCTTCTTCTCTTCACCACCATCGCCAACAACAACTGATTTCAACGGAAAACGACAACAACAACAACCCTCTGAGCGTTGGTTTCGGCATTTTTCCACTCTTAGCAGCCACGCCCTGCGTTCAGGTAGTTCAGAATCAGAGCAATGAGGAGGCGATGGAAGATTCTGGAAAGAAGAAGAAGAAGATCGACGAAGATGAAAATGGCGGTGAATTTAGGGTTTGTACGGACTGCGGAAACAGAGCGAAGAAAGATTGCGTGTACAGACGGTGCAGGAGTTGTTGCAAGGGGCGTGGATATGACTGTACCACTCACGTGAGGAGCACGTGGGTCCCTGCTCTGAAACGCCGCGAGCGCCACGTGGCGGTGACTGGTGTTGGTGGAGAAGCTGCTAATAAGAGGACAAAGAACAATAATGGATGTGCAAGTGGAAGTGCTACCTCTCATTCTCATACTTCCACCAACTCTGATTCCTGCTATTCTCATCAAGATGCTAGGTTCAAAGAATCATTGCCAGGTCATGTTCGTGCACCTGCTGTGTTCAGATGCCATAGAGTCTCAACTGTTGGAAATGGTGAAAATGAATTTGCATATTTAGCAACGGTTCATATAAGTGGCCATGTATTCAGGGGATTTCTCTATGACCATGGTGTTGATCCCAAAAATACAATAATGCCCTCCTATGCTTCAGAACTTCAACTAGGAAACAACTGCATAAGTAATGGGAAGAACAAGGAATGTTCTTCTTCTGCAATTGGGGTTACAACCAATGAATATGATAATCTCTATTCTGCTTCTGCTGCTAGCTAG 852 0.4531 MSMLGLTDLVFIAPNPSSLHHHRQQQLISTENDNNNNPLSVGFGIFPLLAATPCVQVVQNQSNEEAMEDSGKKKKKIDEDENGGEFRVCTDCGNRAKKDCVYRRCRSCCKGRGYDCTTHVRSTWVPALKRRERHVAVTGVGGEAANKRTKNNNGCASGSATSHSHTSTNSDSCYSHQDARFKESLPGHVRAPAVFRCHRVSTVGNGENEFAYLATVHISGHVFRGFLYDHGVDPKNTIMPSYASELQLGNNCISNGKNKECSSSAIGVTTNEYDNLYSASAAS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03564 283 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 58 IPR007818 GO:0003700|GO:0006355
Aip10g03564 283 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 64 274 IPR007818 GO:0003700|GO:0006355
Aip10g03564 283 MobiDBLite consensus disorder prediction 142 169 - -
Aip10g03564 283 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 88 130 IPR006510 -
Aip10g03564 283 MobiDBLite consensus disorder prediction 145 169 - -
Aip10g03564 283 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 58 - -
Aip10g03564 283 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 64 274 - -
Aip10g03564 283 Pfam Domain of unknown function (DUF702) 88 233 - -
Aip10g03564 283 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 185 232 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03564 Aip-Chr10 134022869 134026160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03564 1 266 C2H2 Transcription Factor Family AT5G12330 35.714 1.02e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aip10g03564 DUF702 1.7e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03564 - - ahf:112784666 572.392