Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03543 ATGAGGAACCCTACATGTTGTTGTGTTGTTCAGCTTGTAATTCAAGCTGTGGTGGTGCTTTTGCTGGCTTTGTTATGTGGAGGCTCAGAACGAGAAGCCAAGGCCTTACTTAGGTGGAAAGAAACCCTCCCAGCCCAACCAATTCTTGATTCATGGGCTTTTCAAGCTCAAACTCAAAGCCCGTGTTCATGGAGAGGGATCACTTGTGATTCTCAAGGCAGTGTGGTTGTCATAAACTTAGCATACACCGGACTTACAGGTACCCTTGAAAACTTAGACTTCACTGCTTTTCCCAACCTCCTACGACTTGATCTCAAAACAAATAATCTTAGAGGCACCATACCCCAAAACATTGGGATACTCTCAAAACTTCAATTCCTTGACCTTTCCACCAATTCTCTCAATGGCACTTTACCTCTTTCTATTGCAAATCTCACCAAAGTCTATGAGCTTGATGTGTCAAGAAATAACATAACAGGAACACTAGACCCTCGCTTATTTCCTGATGGAACCAATGAGCCAAGAACTGGCCTCATTAGCATCAGGAATTTCTTGTGTGAAACAACCCTTTTAGGTGGAAAAATTCCAAATGAAATAGGCAACATAAAAAACTTGACATTGCTAGCTTTAGATGATAACAACTTTTATGGGCCTATACCTCCATCTCTAGGAAATTGCACACATTTAAGTGTTCTTAGAGTGAATCAAAACCATTTCTCAGGTACAATACCTTCTAGTATTGGCAAGTTAACAAATCTAACAGACTTGCGGTTTCAAATCAACAACTTAACCGGCACGGTGCCACGAGAATTCGGAAACTTGTCTTCATTAGTTGTACTTCATCTGGCTGAAAACAACTTTGTTGGAGAATTGCCACCTCAAGTGTGCAAAGGTGGAAAGCTTGTCAACTTCAGTGCAGCACACAATAGTTTCACCGGTCCAATCCCAAGAAGCCTTAGAAACTGCCCAACATTGCATCGAGTTCGAATCGAGTACAATCAGTTGACAGGCTATGCAGATCAAGATTTTGGAGTGTATCCGAACCTCACTTACATTGATTTCAGTTACAACAGGATTCGAGGCCGGTTATCTGCGAAATGGGGTGCCTGCAAGAACTTGCAACTACTTAAAATGGCTGGCAATTCCATAAGAGGCTTTATTCCAGAAGAGATTTTTCAACTGAAGCAGTTAGAAAGTCTTGACCTGTCCTATAATCAAATCTCAGGGAAGATTCCTTCACAAATTGAAAATGCAAGTCGCTTGTATGAATTGAAGTTGGGTGGCAACAAACTTACTGGTATGACACCAGAAGAAATTGGAAAGCTTTCTAATTTGGTGAACTTAGACTTGTCCAAGAACATGTTGTTTGGACCAATCCCAAATCAGATAGGGGATTGCACCAACTTGAATCTCTCTCACAACAATCTCTCCGGTCGAATCCCCAAGTCCCTTGGTGAAATGTTGAGCTTGTTAACCATCAACCTCTCTTACAATCATCTGGAAGGCCCTGTGCCTAGAAATGGCATATTCAACTCTTCACTTCTTCCAATGGATTTGAGAAACAACAAAGGTTTATGTGGCAATATCCAAGGTTTGCAACATTGTGAAGACTCAGTCACTGAACCTGTTGATGGAAGTAGTAAAAGAAATGAAATAGTAATACTTTCTGCTGTTACATTGGGAGGTATTTTGTTTCTTTCATTGGTGTTAGTTGGGATTTTGTGCTTCAAGAAAAAGCCAAAATCAACAGTTTCAAAACAAAACTTTTCAGCAAGCATGAGAGAAAATCAAAATCTGTTTTCAATTTGGTCATTCGATGGCAAAATTGTCTACAGAGATATAATTGAAGCTACCAACAACTTTGACAGCCGTTGCTGCGTCGGCGAGGGAGCGATCGGGAGAGTTTACAAGGCAGTTATCAAAGGAGGCCAACAAGAAGAAGTATTTGCTGTGAAAAAGTTGAAATGTGAATCAGAAAGCTTAGATGTTGAGAGTATAAAATCCTTCCAGAGCGAAGTGGAAGCCATGAGAGAAACGCGCCATAGAAACATTGTGAAACTCTATGGATTCTGCTCTAACAAGACACACACATTCTTGATCTATGAGTATTTGGATCGAGGGAACTTAGCTGAGATGCTTGGAAATGATATCAAAGCATTGGAACTAGATTGGCCTAAGAGGGTGAACATTATCAAAGGCGTTGCGCATGCTTTGTCCTATATGCATCATGATCACACTCCTCCATTGATTCATAGAGACATATCGAGCAAGAACATTTTGCTGTCCTCCAATCTTGAAGCTCGTGTCTCCGATTTCGGCACTGCTAGGTTCTTGAAGCCAGATTCATCGATTTGGACGTCGTTTGCAGGCACATATGGCTATGCTGCTCCAGAACTCGCTTACACGATGTTGGTGACTGAGAAATTGGATGTGTTCAGCTTTGGCGTTTTGGCCTTAGAAGTTATTTCAGGAAAGCACCCCGGTGATGTTGTTCTTCACATAAAAGCTTCTAGTCAATCAAGTATAAACATGATTGAAGTTTTAGACCCACGCCTCTCACATCCAACCAATGAACATATTCTGAAAGAGTTGACCTCGATTGCAAATGTAAGTCTTTCGTGTTTGCAGACAAGCCCTCAATCTCGGCCATCCATGCGAAGCATTGCTCGACTGCTTGAAATAGAAGCTGCAGACAACTATTGA 2703 0.4136 MRNPTCCCVVQLVIQAVVVLLLALLCGGSEREAKALLRWKETLPAQPILDSWAFQAQTQSPCSWRGITCDSQGSVVVINLAYTGLTGTLENLDFTAFPNLLRLDLKTNNLRGTIPQNIGILSKLQFLDLSTNSLNGTLPLSIANLTKVYELDVSRNNITGTLDPRLFPDGTNEPRTGLISIRNFLCETTLLGGKIPNEIGNIKNLTLLALDDNNFYGPIPPSLGNCTHLSVLRVNQNHFSGTIPSSIGKLTNLTDLRFQINNLTGTVPREFGNLSSLVVLHLAENNFVGELPPQVCKGGKLVNFSAAHNSFTGPIPRSLRNCPTLHRVRIEYNQLTGYADQDFGVYPNLTYIDFSYNRIRGRLSAKWGACKNLQLLKMAGNSIRGFIPEEIFQLKQLESLDLSYNQISGKIPSQIENASRLYELKLGGNKLTGMTPEEIGKLSNLVNLDLSKNMLFGPIPNQIGDCTNLNLSHNNLSGRIPKSLGEMLSLLTINLSYNHLEGPVPRNGIFNSSLLPMDLRNNKGLCGNIQGLQHCEDSVTEPVDGSSKRNEIVILSAVTLGGILFLSLVLVGILCFKKKPKSTVSKQNFSASMRENQNLFSIWSFDGKIVYRDIIEATNNFDSRCCVGEGAIGRVYKAVIKGGQQEEVFAVKKLKCESESLDVESIKSFQSEVEAMRETRHRNIVKLYGFCSNKTHTFLIYEYLDRGNLAEMLGNDIKALELDWPKRVNIIKGVAHALSYMHHDHTPPLIHRDISSKNILLSSNLEARVSDFGTARFLKPDSSIWTSFAGTYGYAAPELAYTMLVTEKLDVFSFGVLALEVISGKHPGDVVLHIKASSQSSINMIEVLDPRLSHPTNEHILKELTSIANVSLSCLQTSPQSRPSMRSIARLLEIEAADNY 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03543 900 Gene3D Ribonuclease Inhibitor 28 171 IPR032675 -
Aip10g03543 900 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Aip10g03543 900 Gene3D Phosphorylase Kinase; domain 1 581 703 - -
Aip10g03543 900 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 9 469 - -
Aip10g03543 900 SUPERFAMILY Protein kinase-like (PK-like) 612 894 IPR011009 -
Aip10g03543 900 Pfam Leucine Rich Repeat 396 417 IPR001611 GO:0005515
Aip10g03543 900 Gene3D Transferase(Phosphotransferase) domain 1 704 899 - -
Aip10g03543 900 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 468 896 - -
Aip10g03543 900 Gene3D Ribonuclease Inhibitor 257 538 IPR032675 -
Aip10g03543 900 ProSiteProfiles Protein kinase domain profile. 621 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g03543 900 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 468 896 - -
Aip10g03543 900 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 469 - -
Aip10g03543 900 SMART LRR_sd22_2 394 420 - -
Aip10g03543 900 SMART LRR_sd22_2 442 461 - -
Aip10g03543 900 SMART LRR_sd22_2 121 147 - -
Aip10g03543 900 SMART LRR_sd22_2 250 276 - -
Aip10g03543 900 ProSiteProfiles Leucine-rich repeat profile. 396 418 IPR001611 GO:0005515
Aip10g03543 900 ProSitePatterns Tyrosine protein kinases specific active-site signature. 749 761 IPR008266 GO:0004672|GO:0006468
Aip10g03543 900 Pfam Protein kinase domain 627 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g03543 900 SUPERFAMILY RNI-like 102 502 - -
Aip10g03543 900 SMART serkin_6 621 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g03543 900 Gene3D Ribonuclease Inhibitor 172 256 IPR032675 -
Aip10g03543 900 PRINTS Leucine-rich repeat signature 124 137 - -
Aip10g03543 900 PRINTS Leucine-rich repeat signature 394 407 - -
Aip10g03543 900 SMART LRR_typ_2 250 273 IPR003591 -
Aip10g03543 900 SMART LRR_typ_2 442 466 IPR003591 -
Aip10g03543 900 SMART LRR_typ_2 145 169 IPR003591 -
Aip10g03543 900 SMART LRR_typ_2 274 298 IPR003591 -
Aip10g03543 900 SMART LRR_typ_2 121 144 IPR003591 -
Aip10g03543 900 SMART LRR_typ_2 394 418 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03543 Aip-Chr10 133836860 133843858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03543 10 797 Receptor kinase-like Gene Family AT4G08850 38.034 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aip10g03543 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03543 - - ahf:112786571 1323.15