Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03530 ATGGGAGGAGAGAAGAAGAGAATAGAGAAGCAGAAGAAGAAGTCAAAATCATCAGGGGGCTTCGAATCTCTGAATCTAAACCCCAATGTATTCAAAGCAATCAAACGCAAAGGCTACAAAGTCCCCACTCCAATTCAAAGGAAGACGATGCCTCTCATCCTCTCCGGCCACGACGTCGTCGCCATGGCCCGCACTGGTTCCGGCAAAACGGCAGCGTTTCTTGTCCCAATGCTCCACCGCCTCAACCAGCATGTCCCTCAGTCCGGTGTTAGAGCCCTCATATTGTCCCCTACAAGGGACTTGGCTCTTCAAACCCTAAAATTCACCAAAGAGCTTGGTCACTTCACTGATCTTAGGGTTAGTTTGTTAGTTGGCGGTGACAGCATGGAGAGCCAGTTTGAGGAACTGGCTCAGAGCCCTGACATTATAATTGCCACACCTGGTAGGCTTATGCACCATTTGTCTGAGGTAGATGACATGTCGTTGCGTACCGTTGAGTATGTTGTTTTTGATGAGGCTGATTGTTTGTTTGGGATGGGTTTTGCTGAGCAGTTGCACCAGATTCTTTCGCAGCTCGGCGAGAATCGCCAGACGCTGTTATTTAGCGCTACTATGCCCAGCGCGCTCGCAGAGTTTGCGAAGGCCGGCCTGCGAGATCCTCAGCTTGTGAGGCTTGATTTGGAGACTAAAATTAGCCCTGATTTGAAGACTGTGTTTTTTACTTTGAGACAGGAAGAGAAGTATGCTGCATTGTTGTATTTGGTTAGGGAAAGGATTGGTTCGGATCAGCAGACATTGATTTTTGTATCCACAAAACACCATGTTGAGTTTTTGAATATACTGTTTAGAGAAGAAGGGATTGAACCATCTGTGTGTTATGGTGACATGGATCAAGATGCCCGAAAAATACATGTATCAAGGTTTAGGTCGAGGAAGACGATGCTGTTGATTGTGACAGATGTTGCAGCTCGTGGCATTGATATTCCGTTGCTTGATAATGTTATCAATTGGGACTTCCCACCAAAGCCCAAGATATTCGTTCATCGTGTTGGAAGGGCTGCGAGGGCTGGCCGTACTGGCACTGCTTATTCCTTTGTGACATCGGAGGATATGGCTTACCTATTGGATCTTCATTTGTTTCTGTCGAAGCCGATAAAAGCTGCTCCCACCGAAGAAGAGGTCTTGCAGAATATGACTGGAGTAATGTCGAAAATTGAACAGGCAATGGCAAATGGAGAAACTGTTTATGGCCGATTCCCTCAAACAGTCCTTGACCTTGTTTCAGATAGAGTTAGGGAAATTATTGACACTAATGCAGAATTGGAGTCATTGCAGAGAACCTGTAACAATGCATTCCGTTTATATATGAAGACGAAACCCTTACCATCCAAGGAGTCTATTCGAAGAGTAAAGGATTTGCCACGTGAGGGTCTGCATCCGATGTTCAAGAATGTATTGGAAACTGGGGAGTTAATGGCCCTTGCATTTTCAGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACTATCTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATGTACAGGGTCCTTCCGGTCAATGGGTTGATGTGATGAAAAGGAAGAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGCAGTCTAAAAGTACTGTGGAAAAGGTATCAGCATCTGGTTCTAAGAGAAAGCAACAGTGTTTCATGGATGAGGAATACTATATAAGTTCAGTACCTAAAAATCAACACATGGAGGCTGGCCTTTCTGTGAAAGCTAATGAAGAATTTGCCGCAAACAGATTGGATTCTGCTGTTTTAGATCTGGTTGCAGATGATAGTACTGGCATTCAGAAACAAAGATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAATAATGGTGACCGTGTTGCAGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCACCAAGACAGGCATATATAAGAAGTGGAAAGAGCGCTCACACACTAAGGTATCTCTTAAGGGGACAAATAATGATGGTAATGCTCAAGAATCCACGAGTTTTAAAGGATCTTACAGAGGAAGAGGTAGGAATTTCAAAGGCGGCACAAGAGTGCTCGCTCTGATTAAGCTCTTTGTAAAGCATGGACACACAGAAAAGCCAACCTGA 2187 0.4412 MGGEKKRIEKQKKKSKSSGGFESLNLNPNVFKAIKRKGYKVPTPIQRKTMPLILSGHDVVAMARTGSGKTAAFLVPMLHRLNQHVPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILSQLGENRQTLLFSATMPSALAEFAKAGLRDPQLVRLDLETKISPDLKTVFFTLRQEEKYAALLYLVRERIGSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLQNMTGVMSKIEQAMANGETVYGRFPQTVLDLVSDRVREIIDTNAELESLQRTCNNAFRLYMKTKPLPSKESIRRVKDLPREGLHPMFKNVLETGELMALAFSEHLKKFRPKQTILEAEGEAAKSKHVQGPSGQWVDVMKRKRAIHENIINLVHEQQSKSTVEKVSASGSKRKQQCFMDEEYYISSVPKNQHMEAGLSVKANEEFAANRLDSAVLDLVADDSTGIQKQRSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHTKVSLKGTNNDGNAQESTSFKGSYRGRGRNFKGGTRVLALIKLFVKHGHTEKPT 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03530 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 234 396 IPR001650 -
Aip10g03530 728 CDD SF2_C_DEAD 242 366 - -
Aip10g03530 728 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 4 708 - -
Aip10g03530 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 375 IPR027417 -
Aip10g03530 728 SMART DBP10CT_2 610 672 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Aip10g03530 728 SMART helicmild6 276 357 IPR001650 -
Aip10g03530 728 Pfam DBP10CT (NUC160) domain 610 671 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Aip10g03530 728 MobiDBLite consensus disorder prediction 675 700 - -
Aip10g03530 728 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 19 47 IPR014014 GO:0003724
Aip10g03530 728 Gene3D - 3 226 IPR027417 -
Aip10g03530 728 SMART ultradead3 38 239 IPR014001 -
Aip10g03530 728 Gene3D - 236 471 IPR027417 -
Aip10g03530 728 MobiDBLite consensus disorder prediction 1 21 - -
Aip10g03530 728 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 4 708 - -
Aip10g03530 728 MobiDBLite consensus disorder prediction 679 698 - -
Aip10g03530 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 223 IPR014001 -
Aip10g03530 728 Pfam Helicase conserved C-terminal domain 247 357 IPR001650 -
Aip10g03530 728 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Aip10g03530 728 CDD DEADc_DDX54 19 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03530 Aip-Chr10 133729699 133736762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03530 21 390 Eukaryotic Initiation Factors Gene Family AT1G72730 32.527 8.74e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03530 K14808 - gmx:100806274 1204.89