Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03485 ATGGCTATGTTCTTCACGGAGTTGTATTCTTCTGAAACTCGTAAACTAATTGAACGACTCGTTAATTATATTATTTACAAGGGGACATTTCTACCACTGATTGTGCCACCGACAATATATCAGGCTGGTCTTTGGTCAACATGGTTGACTGTGCTCTGTTCTTTAAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGTGACACCTTGGACATATCTTCGTGTATATTCAGCATTGTTATTCGTTTTCTTCATTGATGTTTTCTGGATAAGGTTTTGTGTGTCAGTATATAGAAGCGATCCGTCCTCTCTGCATCTGTTACTATTCTTTGAGCCATTAAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTGCATGGATTTCAGTTCCTTGACATATGGCTTCCTCATTCAGCTTGCAACAGCAGTGATTGCCAAATGCCTAAACTGTTTAATACACTAACAGCAGGTGTCTTACTGGAATGGAAGGGAACTCTTATTCGGAACTTCGGGTTTTTCCTCGATATGGCAACATTTTTAATGGCACTTGGCCATTACCTGTACATATGGCGTCTTCATGGGATGGCTTTTCATCTAGTAGACGCAGTGTTGTTCCTAAACATACGGGCATTGCTTGGTGCAATTATAAATCGTATTAAAAGCTTTCATAGGTTAAGGATAGCTCTAGGAGCACTTAATGCTGCTCTTCCTGATGCGACAGATGCGGAGTTAAGAGCATACGATGATGAATGCGCTATTTGTAGAGAATCCATGGCTAAGGCAAAAAGGTTAAACTGCAATCACCTTTTCCATCTTGCATGTTTGAGATCCTGGTTGGATCAAGGCCTGACTGAAATGTATACTTGTCCCACATGCCGAAAGCCTCTTTTCCCAGGCCGGTCAGAAAATGAAACAAGCTCCAATGTTGGGGGAATATCTAGTGACGAGCAACTGGTACGCAATACAAATGCAGGACTGGATCGGCAAAACTCTGCTAGAAATACCATGCCTGCAGTATTGTATCCCAATCATATACCAAACTCGGCAGACAATGTCCCTTGGAGGGGTGCAGGACTGGACTCAGGCTGGTTGCATTCTTGGCCAAATCAGGGTATTGATGGAGCTGGTCCATCATCTACAACAATCAGAACGGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCAGCTAACATCTGTGGGAGAAACCTATGCCCAGGGTGCCTTTGAAGATGCTTCCTGGAGCCTCTGGCCTATTAATCCCTCCCAGGCTTCTTCTAGTAATCCTACCGTTTCTGTAGGTGAGAGGCCGTCAGGAGGATCAGGTAGCTTACATAGAAGAACTGGTTCGCAATCTGCAAATGATAATATGGCTAATATTCTTGCTATGGCCGAAACTGTTCGGGAGGTTTTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGAGAACAAACTCTGTCACAGTTACTGTGAATAATCTTCTTCAAATGTAA 1524 0.4304 MAMFFTELYSSETRKLIERLVNYIIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSVTPWTYLRVYSALLFVFFIDVFWIRFCVSVYRSDPSSLHLLLFFEPLSIAFETLQAILVHGFQFLDIWLPHSACNSSDCQMPKLFNTLTAGVLLEWKGTLIRNFGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLGAIINRIKSFHRLRIALGALNAALPDATDAELRAYDDECAICRESMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFPGRSENETSSNVGGISSDEQLVRNTNAGLDRQNSARNTMPAVLYPNHIPNSADNVPWRGAGLDSGWLHSWPNQGIDGAGPSSTTIRTVGLGRVQMMMRQLTSVGETYAQGAFEDASWSLWPINPSQASSSNPTVSVGERPSGGSGSLHRRTGSQSANDNMANILAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03485 507 ProSiteProfiles Zinc finger RING-type profile. 259 301 IPR001841 -
Aip10g03485 507 MobiDBLite consensus disorder prediction 428 461 - -
Aip10g03485 507 SUPERFAMILY RING/U-box 248 307 - -
Aip10g03485 507 Pfam Ring finger domain 257 301 IPR001841 -
Aip10g03485 507 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 507 - -
Aip10g03485 507 CDD CUE_RIN3_plant 468 505 IPR035667 -
Aip10g03485 507 SMART ring_2 259 300 IPR001841 -
Aip10g03485 507 Gene3D - 466 506 - -
Aip10g03485 507 ProSiteProfiles CUE domain profile. 467 507 IPR003892 GO:0043130
Aip10g03485 507 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 507 - -
Aip10g03485 507 Pfam CUE domain 471 507 IPR003892 GO:0043130
Aip10g03485 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 309 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03485 Aip-Chr10 133306491 133313625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03485 14 318 C3H Transcription Factor Family AT3G16090 28.707 7.41e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03485 K10636 - gmx:100819656 833.172