Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03461 ATGGATGCGGCTTTGGATTTGCCTCCCGGTTTCAGGTTCCACCCTACAGATGAGGAGATCATCTCTTATTATCTCACTCACAAGGTTTTGAACACAAGTTTCACCGCAACTGCCATTGGAGAAGTTGATCTCAATAAGTGTGAGCCTTGGGACTTGCCTAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTCTGGCAAAGAGATAGAAAGTATCCAACTGGGATCAGAACGAATCGAGCCACGGAATCCGGCTATTGGAAGGCCACCGGAAAAGACAAAGAGATTTACAAAGGGAGAAACCTTGTTGGTATGAAGAAAACCCTTGTGTTCTATAGAGGTAGAGCCCCTAATGGACACAAAACCAATTGGGTTATGCATGAATTCAGATTGGAAGGCCTTTTTGCTACTTACAACCTCCCTATACCTGCTAAGGAGGAATGGGTTGTGTCGAGGGTTTTCCATAAGAACACAACAGAAAAATTGAACCCAACTATTCCATCTGGCCTCTTTAGGATAATGAAGAACATGAACTCAATTGGAGATGATGATCTTGTAGATTTTTCTTCTCTCCCACCTCTCATGGATCCTTCTAATAATTATGATGATGAACACACCACCACCACCAACAACAACTATGTCAATAGTATGTTTGCATCATCATCAGATTATAATATTACTATTCAGCAAAACAAGAAAGATATGATGGGAATAAGGAATAATAATAATAATATTAGAGCATTGTTAATGTACGACGGTCCATCATCATCATCATCAGAAGTAGTTGCTCCTCCTCTCTCTGACTTGGAATTAGGCCTCTGGGATTTATAA 834 0.4065 MDAALDLPPGFRFHPTDEEIISYYLTHKVLNTSFTATAIGEVDLNKCEPWDLPKKAKMGEKDWYFFWQRDRKYPTGIRTNRATESGYWKATGKDKEIYKGRNLVGMKKTLVFYRGRAPNGHKTNWVMHEFRLEGLFATYNLPIPAKEEWVVSRVFHKNTTEKLNPTIPSGLFRIMKNMNSIGDDDLVDFSSLPPLMDPSNNYDDEHTTTTNNNYVNSMFASSSDYNITIQQNKKDMMGIRNNNNNIRALLMYDGPSSSSSEVVAPPLSDLELGLWDL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03461 277 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Aip10g03461 277 Pfam No apical meristem (NAM) protein 8 132 IPR003441 GO:0003677|GO:0006355
Aip10g03461 277 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Aip10g03461 277 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Aip10g03461 277 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 252 - -
Aip10g03461 277 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 4 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03461 Aip-Chr10 133096188 133097580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03461 5 199 NAC Transcription Factor Family AT5G18270 72.362 3.59e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip10g03461 NAM 3.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03461 - - aip:107623055 557.755