Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03447 ATGCCAACAAACGAGACAGGTACATACGGCGGCCATTCTTATGACATTGAAGATAAACGAATGGAAATTGAATTCCAGCAAGCAAAGCAGTACTCAGTGAAAGATTCCAGCGAGCAAAAAGCAAGAAAAAGAAACAAGAAGAGTAGTAAGTTTGTTGGAGTGAGACAGAGAGCATCAGGGAGATGGGTAGCTGAGATTAAAGACACAACGCACAACATCAGAATGTGGCTTGGCACTTATCAGACTGCAGAGGAAGCGGCCAGAGCCTACGACGAAGCCGCGCGTCTTCTTCGCGGCTCCGGTGCTCGGACCAACTTCATCACTCATCATTTCTCGTCGTCCTTGGATCCTCCTGTCGCTTCCCGGATTCGGAATCTTTTGAACAGCAAAAAGGGAATCAGCAGCAGTGATGAGATCATTGAGAACTCATCATCATCATCATCGCTTTCGGGTTCGAGTGAGACAATTGTTACAGAAAGCACACCAACAATACTATGTGATGATAATGCTTATAGACCAGATTTGAGTAGTTTTGAAAGACAAGTATCAGGTTCAGGTTCAGGTTCACCTTATGCAATTCATGGGGTTCATGGATTCATGGATGCTTTTCAAGTTAAGGACTCTAACGAATCTCTCTGGGATCTTCCACCTTTGATGAGCTCGTTTTTCCCTTAA 675 0.4459 MPTNETGTYGGHSYDIEDKRMEIEFQQAKQYSVKDSSEQKARKRNKKSSKFVGVRQRASGRWVAEIKDTTHNIRMWLGTYQTAEEAARAYDEAARLLRGSGARTNFITHHFSSSLDPPVASRIRNLLNSKKGISSSDEIIENSSSSSSLSGSSETIVTESTPTILCDDNAYRPDLSSFERQVSGSGSGSPYAIHGVHGFMDAFQVKDSNESLWDLPPLMSSFFP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03447 224 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 162 - -
Aip10g03447 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 28 162 - -
Aip10g03447 224 MobiDBLite consensus disorder prediction 137 156 - -
Aip10g03447 224 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Aip10g03447 224 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Aip10g03447 224 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Aip10g03447 224 CDD AP2 49 106 IPR001471 GO:0003700|GO:0006355
Aip10g03447 224 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Aip10g03447 224 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Aip10g03447 224 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Aip10g03447 224 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Aip10g03447 224 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03447 Aip-Chr10 133019907 133021106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03447 34 224 AP2-EREBP Transcription Factor Family AT5G19790 35.156 1.36e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip10g03447 AP2 5.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02495 06 111207117 111208192 Aip10g03447 10 133019907 133021106 PCT