Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03434 ATGGATAGATTAATAAGATTAGACCCCTCAAACATAGTCCCAATAAGAGTTGAACCTGGTCAAAAATGTCAAGGCAAGATCACCTTGAGAAACGTCATGTACACTATGCCGGTGGCTTTCAGGCTTCAGCCACTCATTAGGACTCGTTACGCCGTCAAGCCACAAACCGGTGTCATATCACCGTTAGGCACCGTAACGGTTGAGATTTTCTACTACCTTCCTCCGGGTTCCAATCTTCCACATTCTTTCCCTCACACAGATGATTCCTTCCTTCTCCACAGCGTCGTCGTCCCCGGCGCAACCATCAAAGAACCTTCCTCCATGTACGATGCTGTTCCCACTGACTGGTTCACCACCAAGAAGAAGCAAGTCTTTGTAGATAGTGGAATCAAGATCATGTTCGTTGGGTCTCAGATCCTAGCTCAGCTTGTTTCCGATGGTTCAATGGACCAAATCAGAGAGGTACTAGAAAAGAGTGACCCCTCATGGAAGCCTGTGGATTCCGTTGATTCACAAGGACAATCGTTGCTACACCTCACGATTTCGCAACGACGAGCTGATCTTGTTCAGCTGCTTCTTGAATTCGAGCCGGACATAGAAGCTTCGAGTCGTTCTGGGTCGACCCCACTCGAGTCCGCGTCCTCTTCGGGCGAAGCCTTGATTGTGGAGCTTCTGCTGGCCCACAGGGCCAACCCAGAACGATCCGAATCATCTGTGTTCGGACCGATTCATTACGCAGCTAGAGCGGGACACGTGGAGGTTCTAAGGCTTCTCCTTCTCAAAGGTGCCAAGGTGGACGCACTCACAAGAGATGGCAACACGGCGTTACATCTCGCCGTGGAAGAGCGAAGAAGGGATTGCGCTAGGCTCCTTCTGGCAAACGGCGCAAGAACGGACGTTAGAAACACGCGGGAAGGTGACACTCCTTTGCACATAGCGGCATCCACGGGTGACGATCACATGGTGAAGCTCTTATTGCAAAAAGGCGCGAACAAAGACGTGAGAAATCTACAGGGCAAGACCGCGTATGACGTGGCAGCTGAGAACGGACACGCGCGTCTCTTCGACGCGCTTCGGTTGGGTGATAACTTGTGCGTGGCAGCGAGAAAAGGCGAGGTTAGAACAATCCAGAAGCTTCTAGAAAGTGGCGCATCGATCAATGGAAGGGATCAACACGGATGGACAGCACTTCACAGAGCATCGTTTAAAGGGAGAATGGATGCGGTTCGTGTTTTGGTGGAAAAAGGGATCGATGTTGATGCGAAGGACGAAGACGGTTACACTGCGTTGCATTGCGCTGCTGAGTCGGGTCATGCTGACGTCACGGAGTTTCTGGTGAAGAAAGGTGCTGACGTGGAAGGAAGAACCAGCAAAGGTGTAACTGCTCTGCAAATAGCGGAGTCGTTACACTATGTAGGGATCACAAGGATTCTTGTTAATGGAGGCGCTACGAGAGATAACAATTTGAATCAGATAGCAGCGCCTGCTGTAATTCCTTTTGGGAAAAACATGGAAGATGGAAGTTTGTTGATGAAGAAGAAAAAGATCTCTAGGAGCAGAGTGGTACGGGGTAATAATAATAACTTTGATCGTTCTTCAACGCCTCTGGCTGTGCTCTAA 1620 0.4988 MDRLIRLDPSNIVPIRVEPGQKCQGKITLRNVMYTMPVAFRLQPLIRTRYAVKPQTGVISPLGTVTVEIFYYLPPGSNLPHSFPHTDDSFLLHSVVVPGATIKEPSSMYDAVPTDWFTTKKKQVFVDSGIKIMFVGSQILAQLVSDGSMDQIREVLEKSDPSWKPVDSVDSQGQSLLHLTISQRRADLVQLLLEFEPDIEASSRSGSTPLESASSSGEALIVELLLAHRANPERSESSVFGPIHYAARAGHVEVLRLLLLKGAKVDALTRDGNTALHLAVEERRRDCARLLLANGARTDVRNTREGDTPLHIAASTGDDHMVKLLLQKGANKDVRNLQGKTAYDVAAENGHARLFDALRLGDNLCVAARKGEVRTIQKLLESGASINGRDQHGWTALHRASFKGRMDAVRVLVEKGIDVDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEGRTSKGVTALQIAESLHYVGITRILVNGGATRDNNLNQIAAPAVIPFGKNMEDGSLLMKKKKISRSRVVRGNNNNFDRSSTPLAVL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03434 539 Pfam Ankyrin repeats (many copies) 403 446 IPR002110 GO:0005515
Aip10g03434 539 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 539 - -
Aip10g03434 539 Gene3D Immunoglobulins 1 134 IPR013783 -
Aip10g03434 539 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Aip10g03434 539 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Aip10g03434 539 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Aip10g03434 539 Pfam Ankyrin repeats (many copies) 302 346 IPR002110 GO:0005515
Aip10g03434 539 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Aip10g03434 539 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Aip10g03434 539 SUPERFAMILY PapD-like 2 150 IPR008962 -
Aip10g03434 539 ProSiteProfiles Ankyrin repeat profile. 364 391 IPR002110 GO:0005515
Aip10g03434 539 Pfam Ankyrin repeats (3 copies) 242 301 IPR002110 GO:0005515
Aip10g03434 539 Pfam Ankyrin repeats (3 copies) 146 233 IPR002110 GO:0005515
Aip10g03434 539 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 539 - -
Aip10g03434 539 SUPERFAMILY Ankyrin repeat 166 487 IPR036770 -
Aip10g03434 539 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Aip10g03434 539 Gene3D - 363 538 IPR036770 -
Aip10g03434 539 ProSiteProfiles Ankyrin repeat profile. 242 270 IPR002110 GO:0005515
Aip10g03434 539 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Aip10g03434 539 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Aip10g03434 539 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Aip10g03434 539 Gene3D - 136 303 IPR036770 -
Aip10g03434 539 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Aip10g03434 539 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Aip10g03434 539 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Aip10g03434 539 ProSiteProfiles Ankyrin repeat region circular profile. 242 267 - -
Aip10g03434 539 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Aip10g03434 539 Gene3D - 304 362 IPR036770 -
Aip10g03434 539 ProSiteProfiles Ankyrin repeat region circular profile. 425 453 - -
Aip10g03434 539 SMART ANK_2a 305 334 IPR002110 GO:0005515
Aip10g03434 539 SMART ANK_2a 172 201 IPR002110 GO:0005515
Aip10g03434 539 SMART ANK_2a 392 421 IPR002110 GO:0005515
Aip10g03434 539 SMART ANK_2a 425 454 IPR002110 GO:0005515
Aip10g03434 539 SMART ANK_2a 338 388 IPR002110 GO:0005515
Aip10g03434 539 SMART ANK_2a 271 300 IPR002110 GO:0005515
Aip10g03434 539 SMART ANK_2a 238 267 IPR002110 GO:0005515
Aip10g03434 539 SMART ANK_2a 458 487 IPR002110 GO:0005515
Aip10g03434 539 SMART ANK_2a 205 234 IPR002110 GO:0005515
Aip10g03434 539 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03434 Aip-Chr10 132908193 132909812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03434 307 486 Ion Channels AT4G32500 29.121 1.31e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03434 - - gmx:100782444 790.415