Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03423 ATGTTAATGGCAGAAGAGACAGTTCCCAGAAAAGCCAGCTGCTCCAACGACCCACTTATCCAATGCGCCGACCTCATCCTTCCATGGCTAACCCCACCGGAACTCGCCACCGTCTCCATAACCTCTACATCCCTCCACAAGGCCTCCGCCTCCATCACCACCCGCCGATCCTCCGACGCTTCTAGAACCTTCGAGAACCTTCCAGTCCCTTTCCGCAACACCGTCGACCACTACCCCTACGCCTACTTCCTCTACACCCCTTCCCTCATCCTTCCCTCCGCCGCATCCCGCCTCCTCCGCCAACCCTGGGGATCCGCTGCTCCTCTCGCCTCCGCGCCGAGTCGGATCCCCGCGGAATCGGTGAGTTTGGTCGACGAGTTAGGTCAGAGTGTGTTGTCTGGTTGCGACTGCGAGGCTTGTGGCGGTGTGGGTTCCGACTGTCCTTGTTTGGGCTTGGGTGGGCTGGATGACGTGGGCAGTGAGTGCGGGCCGGGATGTGGGTGCGGACCAGAGTGCGGAAACCGGTTGACTCAGAATGGGATTGCTGTTCGGGTGAAGATTGTGAGGGATGCAAGGAAAGGGTGGTGTTTGCATTCTGACCAGTGGATTCGGAAAGAGGAGTTCTTGTTTGAGTATGCAGGCGAACTCTTGACAACCAAGGAAGCGCGGAGGAGACATCAATGTTATGATGAAAAATCATCACATGGTAGATTCTCTTCTGCACTTTTGGTTGTAAGGGAACATCTTCCATCTGGAAACGTATGCTTGAGATTGAATATTGATGCCACAAGAATAGGAAATGTTGCCCGGTTTGTTAATCATTCTTGTGATGGTGGTAACTTGAGCACAAAGCTAATTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTCTGCTTCTTTGCTTCGAAAGATATCCAGACAGATGAAGAGCTTACATTTAGCTATGGAGAAATCAGGAAAAAGGCCAATGGTCTGCCATGCTTTTGCAGTAGCCCTTCATGCTTTGGAACTTTGCCTTCGGAAGACACTTGA 1029 0.5267 MLMAEETVPRKASCSNDPLIQCADLILPWLTPPELATVSITSTSLHKASASITTRRSSDASRTFENLPVPFRNTVDHYPYAYFLYTPSLILPSAASRLLRQPWGSAAPLASAPSRIPAESVSLVDELGQSVLSGCDCEACGGVGSDCPCLGLGGLDDVGSECGPGCGCGPECGNRLTQNGIAVRVKIVRDARKGWCLHSDQWIRKEEFLFEYAGELLTTKEARRRHQCYDEKSSHGRFSSALLVVREHLPSGNVCLRLNIDATRIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFASKDIQTDEELTFSYGEIRKKANGLPCFCSSPSCFGTLPSEDT 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03423 342 Gene3D SET domain 37 323 IPR046341 -
Aip10g03423 342 Pfam SET domain 194 315 IPR001214 GO:0005515
Aip10g03423 342 ProSiteProfiles Post-SET domain profile. 322 338 IPR003616 -
Aip10g03423 342 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 331 - -
Aip10g03423 342 SMART set_7 183 321 IPR001214 GO:0005515
Aip10g03423 342 ProSiteProfiles SET domain profile. 183 315 IPR001214 GO:0005515
Aip10g03423 342 SUPERFAMILY SET domain 66 335 IPR046341 -
Aip10g03423 342 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03423 Aip-Chr10 132801210 132804126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03423 161 337 C2H2 Transcription Factor Family AT2G23740 34.239 1.08e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip10g03423 SET 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03423 K11433 - gmx:100786871 479.944