Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03421 ATGGCTTCCTCTAACGGTCAACAAAACAAGTATTCTCCTTCTAGTTCTACTATGATCCGTTTCTTCAAGGTTATTCTCAGAAAAACTCTTCAAGATGAAAACTTTAAATTACCAAAAAAGTTCACCAGAAAATATGGTTCTGGCCTATCAAACCCATTGTATCTTAAGCCTCCAGATGGTACTGAATGGAGAGTAAATTGGACCAATCATGATGGTAGAACTTTGTTTAAAAGAGGTTGGAAAGAATTTGTTGCATATTACTCTCTTGATGATGGCCATGTGTTATGGTTTGATTATAATATTGGAACTTCTCACATTGAAGTACAAATATTTGACATGAGTGGCCTCCAAATAGAGTATCCTGCCAATGATCAGATCAAAGAACACCCGCCACAACACAGGGTCCAGCCGGTGGAAAGGCCAAAAGAACAACAAACTAGAGACGTGGATAGCAGTCCCAACACTCAGAACTTGAGACTTAATGAGGGACGGCAGAAGAAAAGATTGAATGAACCACTGTTAGGAGGAGTCCAGGGACAATCGAGGAAAAAACTGAGAGCACCAGTGTCATCTGCTTCTAAAGGTAGACAGTTGGAAAATGACACACAAATCAAGGAAGGTATTAGATTTAAAAAGAAAAACCATAAGAAGACAGTGTCTGTCAATCAAGATTCTAATGGCAAAAGGAATAGAAGAAGAAAAGATTCTGAATCTTCTGTTAGGCCCTATCCTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTCAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAAAGCAACTGTCTCAAACGAAAGCACCATGTTACTTTCCAACTAAATTCTTCAGGAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGATTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTTATGCCTTTATCTCTGCTGGTTGGAACTTTTTCGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCGTCAATAGAAAAGATCCAGTGCTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTTCCAAACCAGTGACTCATGGGATTCAGCTCCTGAAAGAAGTTAAGGAGCTCAATTCACAGAATCCCTCTTTCATGGTCAAGATAAAAGACAGTGATCCAAGAAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAATATTTTAAAAAGAATCAGCAGAATGTAAAGTTACAGTTCGGAAAGGAGTTGTGGCCTGTTACGATAATCTACAATCCGTCGTCAAGAAACACCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAGTAAATTAGAAGCTGGAGATAAGAACATCCATGGCTTCTTCTATTTTCCAAAGAAACAAGCATTCTCCTTCCTCTGTGATCAGTTTCTTCAAGATTGGTCTCAAAAAAGCCTTGAAGATGGAAACCTTAAGTTACCAAAAAAGTTCAGTAAGAAATATGGTGATGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGTATGGAAGATAGATTGGTCTTTGTATGATGGTATGATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATAATGGCCATATGCTGTTCTTTGCGTACTACAATGAAACTTCTAACATTGAAGTACACATTCATGACATCATTAGTGGCTTTGAAATAAACTATCCTTCCTTGGATCACATCAGCCATGACAATTCGATTAAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAAAAGTGAAAGCAGCAGCAGAAGTATCATCTCCTTCTACAAGTAAAAGATTGAGGAGTTCTGTCAAAACTGGAGATGTAGAAAAGGGCCCTGATAAACAAAACTGGATGCAGTGTTGCAAGAATGAAGAAGCTAGTCAATCTGAAGAGACAGGTCTTAAGATGCCAACAATTCAAAGTGCCAGAGTTGATCCTGATAGTATGTAA 2028 0.3876 MASSNGQQNKYSPSSSTMIRFFKVILRKTLQDENFKLPKKFTRKYGSGLSNPLYLKPPDGTEWRVNWTNHDGRTLFKRGWKEFVAYYSLDDGHVLWFDYNIGTSHIEVQIFDMSGLQIEYPANDQIKEHPPQHRVQPVERPKEQQTRDVDSSPNTQNLRLNEGRQKKRLNEPLLGGVQGQSRKKLRAPVSSASKGRQLENDTQIKEGIRFKKKNHKKTVSVNQDSNGKRNRRRKDSESSVRPYPARPESLKEAKKFKWEKPSFIIKIKQLSQTKAPCYFPTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCYAFISAGWNFFARASKLQAGDVCLFKLVNRKDPVLDVHICRRQRRESLSKPVTHGIQLLKEVKELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQNVKLQFGKELWPVTIIYNPSSRNTFISAGWSSFARASKLEAGDKNIHGFFYFPKKQAFSFLCDQFLQDWSQKSLEDGNLKLPKKFSKKYGDGVPNPVYLKPPDGTVWKIDWSLYDGMILFENGWKEFASYYSLDNGHMLFFAYYNETSNIEVHIHDIISGFEINYPSLDHISHDNSIKILNELPPRGWPRKKVKAAAEVSSPSTSKRLRSSVKTGDVEKGPDKQNWMQCCKNEEASQSEETGLKMPTIQSARVDPDSM 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03421 675 SUPERFAMILY DNA-binding pseudobarrel domain 490 573 IPR015300 -
Aip10g03421 675 CDD B3_DNA 496 573 IPR003340 GO:0003677
Aip10g03421 675 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 367 460 - -
Aip10g03421 675 MobiDBLite consensus disorder prediction 127 147 - -
Aip10g03421 675 Gene3D - 479 574 IPR015300 -
Aip10g03421 675 Gene3D - 14 115 IPR015300 -
Aip10g03421 675 ProSiteProfiles B3 DNA-binding domain profile. 262 358 IPR003340 GO:0003677
Aip10g03421 675 SUPERFAMILY DNA-binding pseudobarrel domain 381 460 IPR015300 -
Aip10g03421 675 MobiDBLite consensus disorder prediction 127 246 - -
Aip10g03421 675 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
Aip10g03421 675 CDD B3_DNA 385 460 IPR003340 GO:0003677
Aip10g03421 675 SUPERFAMILY DNA-binding pseudobarrel domain 15 114 IPR015300 -
Aip10g03421 675 SUPERFAMILY DNA-binding pseudobarrel domain 257 357 IPR015300 -
Aip10g03421 675 SMART B3_2 21 114 IPR003340 GO:0003677
Aip10g03421 675 SMART B3_2 387 473 IPR003340 GO:0003677
Aip10g03421 675 SMART B3_2 482 575 IPR003340 GO:0003677
Aip10g03421 675 SMART B3_2 263 358 IPR003340 GO:0003677
Aip10g03421 675 PANTHER B3 DOMAIN-CONTAINING 367 460 - -
Aip10g03421 675 CDD B3_DNA 278 356 IPR003340 GO:0003677
Aip10g03421 675 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 479 656 - -
Aip10g03421 675 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 356 - -
Aip10g03421 675 Pfam B3 DNA binding domain 276 358 IPR003340 GO:0003677
Aip10g03421 675 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Aip10g03421 675 Pfam B3 DNA binding domain 489 572 IPR003340 GO:0003677
Aip10g03421 675 PANTHER B3 DOMAIN-CONTAINING 479 656 - -
Aip10g03421 675 PANTHER B3 DOMAIN-CONTAINING 14 356 - -
Aip10g03421 675 Gene3D - 371 477 IPR015300 -
Aip10g03421 675 Gene3D - 245 359 IPR015300 -
Aip10g03421 675 MobiDBLite consensus disorder prediction 608 675 - -
Aip10g03421 675 MobiDBLite consensus disorder prediction 226 246 - -
Aip10g03421 675 ProSiteProfiles B3 DNA-binding domain profile. 481 575 IPR003340 GO:0003677
Aip10g03421 675 CDD B3_DNA 20 112 IPR003340 GO:0003677
Aip10g03421 675 MobiDBLite consensus disorder prediction 646 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03421 Aip-Chr10 132780438 132785280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03421 490 584 B3 DNA Binding Superfamily AT3G18990 36.842 2.30e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03421 B3 2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03421 - - adu:107471893 743.036