Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03420 ATGGCTTCCTTTATTTTCCAAACAAACAAACATTCTCCTTCCTCTCTGAGCTGTTTCTTTAAGATTGGTCTCAAAAAAAGCCTTGAAGATGGAAACCTTAAGTTAACAAAAAAGTTCAGTAAGAAATATGGTGATAGTCTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTTTGTATGATGGTGTGATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATAATGGCCATATGCTGTATTTTGAGTACAATGAAACTTCTAACATTGAAGTACGCATTTTTGACATCATTAGTGGCTCTGAAATAGACTATCCTTCCTTGGATCACATCGGCCATGACAATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAAGTATCATCTCCTTCTACAAGTAAAAGATTGAGGAGTTCTGTCAAAACTGGAGATGTAGAAAAGGGCCCTGATGAACAAAACTGGATGCAGTGTTGCAAGAATGAAGAAGCTAGTCAATCTGAAGAGACAAGTCTTAAGATGCCAACAATTCAAAGTGCCAGAGTTGATCCTGATAAAATTACAGATATATACAACAAAAGTGGAGCTGCAGTTTGGGCTGCCACCAAGATTAAGCAAGACAACTTGTCGATGCATGATAGGCGTCGTCCACTTGCCAGCCATATAGAAACACGCGCCCATGTACCAGACCTGGAAGTAAAAACCGGCTAG 768 0.4023 MASFIFQTNKHSPSSLSCFFKIGLKKSLEDGNLKLTKKFSKKYGDSLPNPVYLKPPDGTAWKIDWSLYDGVILFENGWKEFASYYSLDNGHMLYFEYNETSNIEVRIFDIISGSEIDYPSLDHIGHDNSIEILNELPPRGWPRKTEVSSPSTSKRLRSSVKTGDVEKGPDEQNWMQCCKNEEASQSEETSLKMPTIQSARVDPDKITDIYNKSGAAVWAATKIKQDNLSMHDRRRPLASHIETRAHVPDLEVKTG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03420 255 CDD B3_DNA 18 109 IPR003340 GO:0003677
Aip10g03420 255 SUPERFAMILY DNA-binding pseudobarrel domain 12 109 IPR015300 -
Aip10g03420 255 Pfam B3 DNA binding domain 21 109 IPR003340 GO:0003677
Aip10g03420 255 Gene3D - 12 110 IPR015300 -
Aip10g03420 255 PANTHER B3 DOMAIN-CONTAINING 17 190 - -
Aip10g03420 255 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Aip10g03420 255 SMART B3_2 19 111 IPR003340 GO:0003677
Aip10g03420 255 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 190 - -
Aip10g03420 255 MobiDBLite consensus disorder prediction 235 255 - -
Aip10g03420 255 MobiDBLite consensus disorder prediction 141 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03420 Aip-Chr10 132737970 132739876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03420 7 132 B3 DNA Binding Superfamily AT4G01580 35.385 1.56e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03420 B3 6.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03420 - - aip:107622419 423.705