Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03396 ATGGAAGGCCAACACCACTCATTGCATAAACTAAGGATACAGAACAGCTGTGATTCGGCTACATCCTTCTCGCTGGATTGCTTTCCAAATCTCGTGCGTGTTCAAATCAGCGAGTGTGAAAAGATGCAGTCTGTCGTGGTGTCACGCTCTCTTTCATGTCTCCGTTCTTTAGTGATAAATTCTTGTGGGAGTTTGAAATCCCTGCAGACGCTATGGATGGCATCACCTCAGCTAGAAGATCTCTCATTACGTGGTTGCCCAGAGATTGATTTGTGTGCTACAGGGGATCCACAGCGTAGCTTGAGAGATCTTACCATCAGCTACTGCGAGAAACAACTCAGCTGTGTAGCATCGCAGTTTCATGGGCTTACTCATCTTTCTATTAAAGGTGAATATATTTTTTTTTGGTGTCTTATTGAAGGTGAATATGAGAATGTGAAGTGTCTCCCTAAGGAAGGTTGGTTGCCTGCCACCCTTGAGTCTCTCAGACTGGATGGCATTAAAAGTGTGGAGATGTTGGAATGCAAGGGACTTGCCCACCTCACCTCCCTCCAACAATTATCTATTTATGATTGTTCCAATTTGGAGAACATTGACGGAGAAAAGCTGCCTGCCTCTCTGTTACAACTCATCATCAAGGGAAGCCCTTTGTTGGGTAAACTGTGTGAGATGAAGGACCCGCAGAATAACTTTGATTACTCAAAATATGAAAATTTGTATGTGGTGGTTGAAACTTTCTTGCACAAAGCAACTGAGCAACCAGGGCCAATCATGGACACAATCCAAGAGATTCAAGAGTCGCATGGCACACTGATTGATATAGAGCGGAGCCCCAATGAACTTCATCAACTGTTCTTGGACATGGCTGTTTTGGTCCAATCACATGGTAAGCAACTCAATGACATAGAGAGCCACGTGGCAAGAGCCAATTCATTGCCATTAATAACTGGTGAATGTGGAGTTGCATTTCACTTTCTTGTTATCACTGTTCAGTCTGCAGAAACTAGCTTGTGGGTATCTGAATTCAACAACCCAAGGAATTTGAATGCCAATGTCCCAAGTTAG 1065 0.4376 MEGQHHSLHKLRIQNSCDSATSFSLDCFPNLVRVQISECEKMQSVVVSRSLSCLRSLVINSCGSLKSLQTLWMASPQLEDLSLRGCPEIDLCATGDPQRSLRDLTISYCEKQLSCVASQFHGLTHLSIKGEYIFFWCLIEGEYENVKCLPKEGWLPATLESLRLDGIKSVEMLECKGLAHLTSLQQLSIYDCSNLENIDGEKLPASLLQLIIKGSPLLGKLCEMKDPQNNFDYSKYENLYVVVETFLHKATEQPGPIMDTIQEIQESHGTLIDIERSPNELHQLFLDMAVLVQSHGKQLNDIESHVARANSLPLITGECGVAFHFLVITVQSAETSLWVSEFNNPRNLNANVPS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03396 354 PANTHER SYNTAXIN 244 311 IPR045242 -
Aip10g03396 354 CDD SNARE_syntaxin1-like 260 309 - -
Aip10g03396 354 Gene3D Ribonuclease Inhibitor 96 226 IPR032675 -
Aip10g03396 354 Gene3D Ribonuclease Inhibitor 3 95 IPR032675 -
Aip10g03396 354 Pfam Syntaxin 249 296 IPR006011 GO:0016020
Aip10g03396 354 Gene3D - 234 311 - -
Aip10g03396 354 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 261 306 IPR000727 -
Aip10g03396 354 SUPERFAMILY t-snare proteins 256 310 IPR010989 GO:0016020|GO:0016192
Aip10g03396 354 PANTHER T-SNARE-RELATED 244 311 - -
Aip10g03396 354 SUPERFAMILY RNI-like 6 211 - -
Aip10g03396 354 SMART tSNARE_6 256 325 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03396 Aip-Chr10 132471702 132474803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03396 244 312 SNARE and Associated Proteins AT3G52400 63.380 2.14e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03396 - - adu:107472405 285.419