Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03330 ATGATCGCTGCATCGCCATCCTCGACTGAGATTTCGGCTTCCCTCCTCGGTTCTGGTCACATGCAGACAAGCTATGGCTATCTCTGCGATTCGATTCAGTTCCACCATGAGGGTGTTCTTCTCTTCGTTGTTTCTGTTCCTTTCTCCCCAGGGTTGTTCTGTCTCTCTCTGTCGAGGATGCCTCAGTCTCCATGTCGACTTCTCGTTGTACCCAACACTGGTTTGAACAGGGTGACAAAACATCGGTTCAGACTTTTGTTCCAATACAACACATCTGTTGTTTCTGTGGTATCTCCAAGGATACCTCATTCGGGTCTGTGTTTTGCATCATTAGATGAAATTGATCAAATGACAAAGGACCACAATTTCCTGATTGACTTTGTTGGGATTATTACTGGTGTTCGAAAAGAAAGAGATGTGGCATCATATGGGAAGTTGGTGAAAGCAGTGGTGCTAGAAGTCTTTGCTGATGGCAAAAGGGTACAATGCAATGTGTTTGGAAATGCTTGTGATTTGTTAGAATATGATAAGTTACAAAAATATGGAAGATCTCCCCTAGTTGTCCTCGAGTCTTTTAAAATCAAAGCCATTAAAGGTGGGGTAATCCTACAGAATGTGATAGATGTCTCTAGGTTATTCATTAATCCTGACATTCCTGAGGCCGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGCCTTGTGACCAATGACCTTGGATACTTAGTTTCTAAAGTTGATGGTGATTATTTCAATTCCAAAGAGATCAGTAATATTCAAGATCTTCATTCAGATAATGGGGATTCTCATTACTTTGTTATTGGGACAATTAAGGAAGTCATGGATGAACCAGATTGGTGGTACTATACATGTGTGTGTGGTCAAGCTGTTGTTGAGCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAGAATGTTATGGTCAAATATGGGATTCGGGTAAAGATTCAGGATGCTAGCTGTACTGTTTTGTTTCTTTTGCTTGATAATGCGGCAACAAAACTATTTGGAAGAACCTGTTCTGAAGCATTTCTTAGCATAGAAGATGAATTTCCAGTTGATCCTAGTGTGCTTGCAGTCTGTCGGTCATATTCTCCACAAATGTTTGATCATGTTGTTGGAGAGGAGAAAGGTTTCAAGGTTGAAATTGATTCTACAGTTGATCCAGATTACTCCAGTTGCTTTAAAATTGTGAATGCCTTTAGTCATAATCAAGAACCAGTTGCAGTTGATGATTATATCAATGCAATGCTTCATGGTCCCATTTTTCCACCAATCTATGATAGCTACTTGCAGTATGCAACTGGCGAAGATTACAAGACTCAAGTAGTTTGTGATAATGCTATTCAATCAGAAACTATTGAAGGTATTATCACTGATCTTATTTCACCGAACCGCTGTTATTCTGATTCTGAGAACGGTGGTTTTGTTTTTATTCTGGGAACTATATCATCTGTGTTGAAGAATCATAAGTGGTGGTTCTCAACTTGTTTATGTGGTTCTCTTGTGTCAACTAATAAAAATATTTTATCATGTGATCTATGTCAGCTTCAATGCATTGATGCTGTCCGAAGGTTCTGCTTGAAGGTTGTAGTGTCTCATTCAAATGGGAACAATATTTTTATTCTTAAAGACCGTGAAGTCGTCCAAATAATAAAGACAAGATGCTCGAGCTTTTTGGATAATCACCCAGAGTTGAGTCAGGATGATGCCTCTGTTATTAATGTTTTTGAGGCTGCTGCTGAGATGAATGACCATAAGATTCATGTTCTGGTTGATTCTATACCTGAAGTTGAGGATGCTTTCAGCCAATGTGGAAGTGATCATGAGGCCGTGGAGGATCTGCATGCTTTTTAG 1899 0.3965 MIAASPSSTEISASLLGSGHMQTSYGYLCDSIQFHHEGVLLFVVSVPFSPGLFCLSLSRMPQSPCRLLVVPNTGLNRVTKHRFRLLFQYNTSVVSVVSPRIPHSGLCFASLDEIDQMTKDHNFLIDFVGIITGVRKERDVASYGKLVKAVVLEVFADGKRVQCNVFGNACDLLEYDKLQKYGRSPLVVLESFKIKAIKGGVILQNVIDVSRLFINPDIPEAVEFLSRFSVASYGFSSLVTNDLGYLVSKVDGDYFNSKEISNIQDLHSDNGDSHYFVIGTIKEVMDEPDWWYYTCVCGQAVVEHEDLYLCDACGSCVENVMVKYGIRVKIQDASCTVLFLLLDNAATKLFGRTCSEAFLSIEDEFPVDPSVLAVCRSYSPQMFDHVVGEEKGFKVEIDSTVDPDYSSCFKIVNAFSHNQEPVAVDDYINAMLHGPIFPPIYDSYLQYATGEDYKTQVVCDNAIQSETIEGIITDLISPNRCYSDSENGGFVFILGTISSVLKNHKWWFSTCLCGSLVSTNKNILSCDLCQLQCIDAVRRFCLKVVVSHSNGNNIFILKDREVVQIIKTRCSSFLDNHPELSQDDASVINVFEAAAEMNDHKIHVLVDSIPEVEDAFSQCGSDHEAVEDLHAF 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03330 632 SUPERFAMILY Nucleic acid-binding proteins 483 591 IPR012340 -
Aip10g03330 632 Gene3D - 100 234 IPR012340 -
Aip10g03330 632 Gene3D - 248 422 IPR012340 -
Aip10g03330 632 Gene3D - 461 608 IPR012340 -
Aip10g03330 632 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 83 352 - -
Aip10g03330 632 SUPERFAMILY Nucleic acid-binding proteins 255 400 IPR012340 -
Aip10g03330 632 PANTHER REPLICATION FACTOR A 1, RFA1 83 352 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g03330 632 CDD RPA1_DBD_B_like 126 228 - -
Aip10g03330 632 Pfam Replication factor-A C terminal domain 277 356 IPR013955 -
Aip10g03330 632 SUPERFAMILY Nucleic acid-binding proteins 108 230 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03330 Aip-Chr10 131784708 131789258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03330 101 358 Core DNA Replication Machinery Family AT5G45400 20.213 3.01e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03330 - - ahf:112786912 1077.39