Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03288 ATGTCGAAATCGATCACGCATCTGATTTGTTGGAAGTTTGAGGGAAGAAAGTATGAGATTGCCCAAAAGTTTGATATAATTATAGTCAATCATCGGTGGATTGAAGACTGCATTAAAGAAGGAAGGCGCGTGCCAGAAGAGTCATATATCTTGCAAAGTGGATATGAAGTTGGGCCATTGTTACTGGAAGTTCCAATCAGTGTTCCAGCAACTAGATTGACAAAAAATAAAGTTATAACTCATCAAATATATGATATTGACTCTGGAGAGCAAACAACTGAGATCAGTTTTGGAGCTTCGGAAAATTCTGTTTGGGAAGATTTAAATACAAAGCATGACAAGTCCATTGCTTATCCTTCTAGACGGTCAAGGAAAGGAAAAAGAAGTATCTGTGCTGGTAATGGAGGTTGTACTGTGGCTGAACCTTCTCCTAAAGGCAGAAGGATTGTAAACAATATTGTTGATGAAGTGGTGTTGGACCCTTTATTGGATGTGGTCCCGGACAACCACCATAATAGATGGGATAGACGAAACCATGATGCTGCAGCTACCACTAGCCTTTGTAGTGGTGTCAATAAGGGAAATACAATTGAAAATGGAGAAACAACAGATGCCGGATTGTCTACTCAAAATGAAACTATCAATGGAACTTCAGATAGCATTGAAGAGATCGATCATTCGAACAATGTATCAGCTCTTAGAAGTTCAACTTTCTCTGTAGAGTATCACCTACCTATGACGCAAATGTCGACAGATACATGTTCTTCTGCTGAAAAGTTCACAGATGATTGTCAGGATGAACATGTTGCTGGCTTACCTACATCCAGTGAGTTATCCTGTGTTATCTGTCACGCAGATTTCAGCGCAACAAGGGGAATTCTTCCATGTGGACATCGATTTTGTTTTGAATGCATTCATAGTTGGGCTAATCATAGGACTTCAACGAGGAAAAATGCAACCTGTCCTTTGTGCAAGGCAAGTTTTCAGTCGATCAAGAAGGTTGAGCATGCAGATAAAATTGATCAAAAAGTATACACCCAGACAGTCCCATGTCACAATTCAGCTGAAGATGTTTTTATCGCTCCACATCAAGGATTTCCCGATTACCCTTTTGAGTCCTCAGTGGCAAACTCTTGTGTAGTTTGTGGTGGTCTGGAACCAGAGGATCTCCTTGACAGGTGTGATATTTGCCAAACTCGAAGAATCCATATCTATTGCCTGGACCCTCCTATAACTCCATGGATATGCAATCCCTGCAACCAACTACGGAGAAGTTACTATGATCGCTCGTATTAA 1296 0.4066 MSKSITHLICWKFEGRKYEIAQKFDIIIVNHRWIEDCIKEGRRVPEESYILQSGYEVGPLLLEVPISVPATRLTKNKVITHQIYDIDSGEQTTEISFGASENSVWEDLNTKHDKSIAYPSRRSRKGKRSICAGNGGCTVAEPSPKGRRIVNNIVDEVVLDPLLDVVPDNHHNRWDRRNHDAAATTSLCSGVNKGNTIENGETTDAGLSTQNETINGTSDSIEEIDHSNNVSALRSSTFSVEYHLPMTQMSTDTCSSAEKFTDDCQDEHVAGLPTSSELSCVICHADFSATRGILPCGHRFCFECIHSWANHRTSTRKNATCPLCKASFQSIKKVEHADKIDQKVYTQTVPCHNSAEDVFIAPHQGFPDYPFESSVANSCVVCGGLEPEDLLDRCDICQTRRIHIYCLDPPITPWICNPCNQLRRSYYDRSY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03288 431 CDD RING-HC 280 324 - -
Aip10g03288 431 Pfam twin BRCT domain 1 33 IPR001357 -
Aip10g03288 431 PANTHER F5A8.9 PROTEIN 105 428 - -
Aip10g03288 431 PANTHER F5A8.9 PROTEIN 1 74 - -
Aip10g03288 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 362 IPR013083 -
Aip10g03288 431 ProSiteProfiles Zinc finger RING-type profile. 280 325 IPR001841 -
Aip10g03288 431 SUPERFAMILY FYVE/PHD zinc finger 368 422 IPR011011 -
Aip10g03288 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 430 IPR013083 -
Aip10g03288 431 ProSiteProfiles BRCT domain profile. 1 51 IPR001357 -
Aip10g03288 431 Gene3D BRCT domain 1 55 IPR036420 -
Aip10g03288 431 SMART ring_2 280 324 IPR001841 -
Aip10g03288 431 SUPERFAMILY RING/U-box 273 332 - -
Aip10g03288 431 ProSitePatterns Zinc finger RING-type signature. 296 305 IPR017907 -
Aip10g03288 431 SUPERFAMILY BRCT domain 1 52 IPR036420 -
Aip10g03288 431 Pfam Ring finger domain 279 325 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03288 Aip-Chr10 131166194 131171059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03288 5 57 Core DNA Replication Machinery Family AT4G02110 55.556 4.29e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03288 - - aip:107621679 764.607