Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03268 ATGCTGAGGGAAGGAACAAACATCAATATTGGCGGGAGTTGCAGCTCCACCAACAACTGGTCACGTGCCTGCGACACGTGCCGCTCTGCACCCTCCGTGGTGTACTGCCGCGCGGACTCTGCCTATCTCTGCTCCGCATGTGACGACAGAGTCCACGCGGCAAATAGGGTGGCGTCGAGGCACGAGCGCGTGTGGGTCTGCGAGGCTTGCGAGCGTGCCCCGGCAGCCTTCCTCTGCAGAGCCGACGCCGCCTCCCTCTGCTCCTCCTGCGACTCCGACATCCACTCCGCCAACCCCCTTGCCGGCCGCCACCACCGCGTCCCCATTCTCCCCATCTCAGGCTGCTCCTCGCTCATCCGAGAAGAAGAACAAAAAGAAGGAGAACCAGAAAGAGAAAATGATCACGTGTTTGAAATTGAAGGTACAATTAATAATCAGAATTATAACCATGGATGTGAAATGGAGGATGAGGAGTGTGAGGGTGATGATGAGGCTGAAGCTGCTTCGTGGTTGTTGCCTCATCCTGTGAGGATGGGTGGTAACGATGAGAGTGATGGGTTCTTGTTTTGTGGTGGCGACGGTGACGGCGATGGTGATGAGTACTTGGAGTTTGTGGATTGTGATGATGATAATAATAATAATAACCGGTTTAGTTGTCTTGATCATGATCAAGATCAAGATATGCTGCATAACTATGGCGGCGATCATAATCAGGGAAACAACCATGACAGCGTGGTTCCGGTTCAGATGCAACAGTGTTTCGAGTTTGACTCCTCTAAAGTTGGTGCTGGATTCAGTTACAATGGTTCTCTTAGTCAAAGTGTTTCATTGTCATCCATGGAAGTTGGAGTTGTACCAGAATCAACATTGAGTGATGTGTCAATCTCACATTCAAAGGCACAAATAGGAACAAGTGAGCAATTTCCTCCAATGCCTATGCCTTCACCACTTCTAACTCCAATGGACAGAGTAGCCAGAGTTCTAAGATACAAAGAGAAAAAGAAAACAAGAAAGTTTGAGAAGAAAATAAGATATGAATCAAGAAAGGCCTATGCAGAAACCAGGCCACGTATTAAGGGTCGTTTTGCAAAGAGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTATCATCAACCCTAATGTCAGAAGCTGGATATGGCATTGTTCCTTCCTTCTGA 1179 0.4826 MLREGTNINIGGSCSSTNNWSRACDTCRSAPSVVYCRADSAYLCSACDDRVHAANRVASRHERVWVCEACERAPAAFLCRADAASLCSSCDSDIHSANPLAGRHHRVPILPISGCSSLIREEEQKEGEPERENDHVFEIEGTINNQNYNHGCEMEDEECEGDDEAEAASWLLPHPVRMGGNDESDGFLFCGGDGDGDGDEYLEFVDCDDDNNNNNRFSCLDHDQDQDMLHNYGGDHNQGNNHDSVVPVQMQQCFEFDSSKVGAGFSYNGSLSQSVSLSSMEVGVVPESTLSDVSISHSKAQIGTSEQFPPMPMPSPLLTPMDRVARVLRYKEKKKTRKFEKKIRYESRKAYAETRPRIKGRFAKRTDVEAEVDQMLSSTLMSEAGYGIVPSF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03268 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 392 IPR045281 GO:0009909
Aip10g03268 392 Pfam CCT motif 323 365 IPR010402 GO:0005515
Aip10g03268 392 CDD Bbox1_BBX-like 23 66 - -
Aip10g03268 392 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Aip10g03268 392 Pfam B-box zinc finger 22 64 IPR000315 GO:0008270
Aip10g03268 392 ProSiteProfiles CCT domain profile. 323 365 IPR010402 GO:0005515
Aip10g03268 392 SMART bboxneu5 67 109 IPR000315 GO:0008270
Aip10g03268 392 SMART bboxneu5 19 66 IPR000315 GO:0008270
Aip10g03268 392 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Aip10g03268 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 18 392 - -
Aip10g03268 392 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Aip10g03268 392 CDD Bbox1_BBX-like 66 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03268 Aip-Chr10 130889391 130891859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03268 1 392 C2C2-CO-like Transcription Factor Family AT3G02380 47.826 3.77e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aip10g03268 zf-B_box 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03268 - - ahf:112717988 641.728