Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03254 ATGGATAGGCATGATGAGCAAAACTCCAATCCCTTCGCAACCACCGATTCCGATTCCGATTCCGACTCGGTGAGTTGCTTCGTCACCGATCTCTTCGAAACTCGCTCTGAGCCTTCTCGTCATTGCTCCTGCGGTGACGTCAACATAAACCCCTTCTCCGGCGTCGTTTGCGACCTTCACGGGGAAGCATCGTTAGGGTTAGGGTTTGGAGCTGAAATTGGATCCCAAAATGACAATCACAGTGGTGTTTTCGATTTCTCGATAGGTGATAATAATGGTTTGGGTGGGCTTAGGGTTGTTGGATTCGGATCCGATTCGGATTCGGCTGGAGAGGAAGGTGAGCTTGATCGAGCTATGGAGGAGTTCGGTTCTTCTGGTGTGCGTGGTTTTAGTGATGATGATGATCATAGGGTTGATGGTGGAGGGTTTGATGATTTTGATGTTAGGTTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACCTTGAATGAGAGTTTTGAATGGGAGGAGGTAGAGGAGAGGGTGAATGATAGGGAAGATTCGAGTTTGGTGATTGATGAGGTTGAGGTTGATGATCAATCAGTGGCGTCCGGGTTTTCGCACAGCGAGGATCCTGGCGAGGAGGCGTTGAGGTACCTGGAGTGGGAAATTCTCTTGGCTGTGAACAATTTGGAGAGGAATTCAATCTTGGAACATGAAGCCAATGTGGATTCTTATTTAGCAGTTGGGGATGGTTATATGTACACTGCTGAGTATGATGTTCTGTTTGGACAGTTTCTGGAGAATGAGAGTGCCTTGAAGGGTAGTCCCCCTGCGGCGAAGAGTGTCGTGGAGAATCTTCCGGTGGTTGAGTTGACAAAGGAGGAGTTGCAGGGGAAGAATGTGGCTTGTGCTATTTGTAAAGATGAGATATTGTTGGAGGAGAAGGTGACTAGGCTTCCTTGCTCGCACTGTTATCATGGGGATTGCATTATGCCTTGGTTGAGTATTCGTAACACGTGCCCTGTTTGTCGATTTGAGTTGCCTACCGATGATCCTGAATACGAGCAGAGGAAGAGCCGGATGGCTGCTCACGAGATGGTGGAGCTTGCAATGCAGAGGCAAGTTTGA 1113 0.4852 MDRHDEQNSNPFATTDSDSDSDSVSCFVTDLFETRSEPSRHCSCGDVNINPFSGVVCDLHGEASLGLGFGAEIGSQNDNHSGVFDFSIGDNNGLGGLRVVGFGSDSDSAGEEGELDRAMEEFGSSGVRGFSDDDDHRVDGGGFDDFDVRLCWDSLCLEDQRTLNESFEWEEVEERVNDREDSSLVIDEVEVDDQSVASGFSHSEDPGEEALRYLEWEILLAVNNLERNSILEHEANVDSYLAVGDGYMYTAEYDVLFGQFLENESALKGSPPAAKSVVENLPVVELTKEELQGKNVACAICKDEILLEEKVTRLPCSHCYHGDCIMPWLSIRNTCPVCRFELPTDDPEYEQRKSRMAAHEMVELAMQRQV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03254 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 345 IPR013083 -
Aip10g03254 370 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Aip10g03254 370 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 7 368 - -
Aip10g03254 370 SMART ring_2 298 338 IPR001841 -
Aip10g03254 370 MobiDBLite consensus disorder prediction 1 23 - -
Aip10g03254 370 Pfam Ring finger domain 298 339 IPR001841 -
Aip10g03254 370 SUPERFAMILY RING/U-box 286 345 - -
Aip10g03254 370 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 7 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03254 Aip-Chr10 130706445 130708167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03254 85 354 C3H Transcription Factor Family AT3G02340 41.319 2.57e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03254 - - gmx:100812037 459.144