Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03253 ATGGACTTGGGAGATGAAACCGACATCTCTCAACCCTACACCCAAGAGGACGGCGACCCCCACCTCATCGGCTTCATCAACGCCAACATCGTCGGCCTCCGCTACTACTCCGGCATCGTCAACGGCCGCGAAATGGTCGCCCTCCTCCGCGAACCCCTCAACCCTTACGACCCCAACGCCATCAAAGTCCTCAACACCCGCTCCATCCAGGTCGGTCACATCGATCGCACCGTTGCCGCCGCGCTTTCCCCTCTCATCGACTCTGAACTCATCACCGTCGAAGCCATTGTCCCCAACCGCCGCTCCAAGACCAACAGCTTCCGCCTCCTCTGCCAAATCCACATCTTCGCCCCTCTCCCTTCGTTCCCCACTGTCATTGAGCTCATCTCCGAGAGAGGCCTCCACCTCATAACCCAAAACGACGCCTCCTTTACGTTATCGGAGTCCGTTGCCGTTAAAGAAACCCGCGCTGATTCGAGGTTCAAGAGTGTGGACGAGATTTTCAGGCTTGTTGATGAGAGCTTGACGGTCAAGGAGCGTGTGTCTCACGCGCTTGAGCCTCCCGAGAGCATTGTGAGGTCGAAGCTCATGGCGCACCAGAAGGAAGGGCTGTGGTGGCTACTCAACAGAGAGAAAAGCGAGGAGCTTCCACCGTTTTGGGAGGTGGGAGAAGGGGGCGAGTTTGTCAACGTGTTGACCAATTACAGCACGTGCGTTAAGCCAGAGCCTTTGAGGGGAGGGATCCTGGCCGATGCAATGGGGCTCGGGAAGACTCTCACTTTGCTCTCTCTTATTGCCCTTGACAAGGATTCTGGTCAGAGAAAGGGAAAGAAGAGAAGAAAGATTGAGATTGGGGAGAGCAGTGCAACGCTTGTAGTGTGCCCTCCTTCTGTGTTTTCGACATGGATTTCGCAATTGGAAGAACACACTGTGCCTGGTTCACTGAGGACTTGCATGTATTATGGTGACAAGAGGGCTAAGAATGCTGAGGACCTCATGGATTATGATTTGGTGCTCACTACTTACTCTACACTCTCCGTGGAGGAGGATGACCCCGACTCGCCCGTGAAGAAAGTGGTGTGGAGGAGGATCATATTGGATGAGGCTCACACTATCAAGAATTCAAATGCCCGGCAGAGCAAGATGGTTATTAGTCTCAATGCCAAGAGGAGGTGGGCTGTCACCGGCACACCTATTCAGAATGGCTCCTTGGACTTGTTTTCTCTCATGGCTTTCCTGCATTTTGAGCCCTTCTCCATAAAGAGCTATTGGCGCAGCCTTGTGCAACGGCCTCTTAATCAGGGCCTTCAGAGCGGCCTCTCACGCCTGCAGGTTTTGATGGCTGCAATTTCGTTAAGAAGAACAAAAGATAATGGATTGTTAGGGGTGCCACCAAAAACTATTGAGACTCAATATGTTGAACTTAATTCAGAAGAACGTGAATTGTATGATCGGATGAAAGAAGAAGCGATGCTTTTAATGAGGAGTTTTACCAATGGAACTAACAATTTTCCTGTTGTACTAAGTATGCTTTTGCGTCTTCGCCAAATCTGTACTGATTTAGCATTGTGCCCCACTGATCTCGCAACGACATTCCGTTCAACTAATCTTGAAGATGTTTCGAATAACCCAGAGTTGTTGCAAAAGTTAGTTGAGATGTTGCAAGAATGTGAAGATTACGAGTGCCCAATTTGCATTTCTCCTTCAGCGGACATCATTATCACCAGCTGTGCTCACATCTTCTGCCGACTCTGTATTCTGAAATCTCTACAATCCAGCAGATCCCGTTGTCCTCTTTGCCGTCAAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATAGAGCCTTCTAAAGCTGACAGTACCTCTTCATCCTCATCATCGGATAAAAAGTTATCTTCCAAAACATCTGCTTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATCGGTAGTGTTTTCACAATTTCGCAAGTTGTTAGTGTTATTGGAAGCGCCTTTGAAGGAGGCTGGTTTCAAGACTTTGCGCATTGATGGCTCGATGACAGTTAAACAGAGGGCTAATGTTATTGATCAATTTCAAGACACTAAAGAAAACGGACCGACCGTTCTGCTTGCAAGCCTTAGGGCTTCAGGTGCAGGTATAAATCTCACAGCCGCCACCACGGTGTATTTCATGGAGCCATGGTGGAATCCGGCTGTCGAGGAACAGGCAATGGATCGCATCCATCGTATTGGACAGAAAGAGGCGGTGAAGATTGTTAGATTGGTTGTTCTGGACAGCATTGAGGAAAAGATACTGTTGTTGCAGGAGAAGAAGAGGGAATTAGCAAGAGAAACATTTAACAAGAGGGGAAGTGAATCTGGTGGCATGAACTATAAAGATCTAAGTTTCCTTATGTCCATAGAATGA 2427 0.4854 MDLGDETDISQPYTQEDGDPHLIGFINANIVGLRYYSGIVNGREMVALLREPLNPYDPNAIKVLNTRSIQVGHIDRTVAAALSPLIDSELITVEAIVPNRRSKTNSFRLLCQIHIFAPLPSFPTVIELISERGLHLITQNDASFTLSESVAVKETRADSRFKSVDEIFRLVDESLTVKERVSHALEPPESIVRSKLMAHQKEGLWWLLNREKSEELPPFWEVGEGGEFVNVLTNYSTCVKPEPLRGGILADAMGLGKTLTLLSLIALDKDSGQRKGKKRRKIEIGESSATLVVCPPSVFSTWISQLEEHTVPGSLRTCMYYGDKRAKNAEDLMDYDLVLTTYSTLSVEEDDPDSPVKKVVWRRIILDEAHTIKNSNARQSKMVISLNAKRRWAVTGTPIQNGSLDLFSLMAFLHFEPFSIKSYWRSLVQRPLNQGLQSGLSRLQVLMAAISLRRTKDNGLLGVPPKTIETQYVELNSEERELYDRMKEEAMLLMRSFTNGTNNFPVVLSMLLRLRQICTDLALCPTDLATTFRSTNLEDVSNNPELLQKLVEMLQECEDYECPICISPSADIIITSCAHIFCRLCILKSLQSSRSRCPLCRQALSESDLFSAPIEPSKADSTSSSSSSDKKLSSKTSALIKFLKESREQKPTAKSVVFSQFRKLLVLLEAPLKEAGFKTLRIDGSMTVKQRANVIDQFQDTKENGPTVLLASLRASGAGINLTAATTVYFMEPWWNPAVEEQAMDRIHRIGQKEAVKIVRLVVLDSIEEKILLLQEKKRELARETFNKRGSESGGMNYKDLSFLMSIE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03253 808 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 277 794 - -
Aip10g03253 808 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 10 267 - -
Aip10g03253 808 Pfam HIRAN domain 23 114 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aip10g03253 808 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 416 IPR014001 -
Aip10g03253 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 806 IPR027417 -
Aip10g03253 808 SMART ultradead3 192 430 IPR014001 -
Aip10g03253 808 Gene3D - 610 801 IPR027417 -
Aip10g03253 808 Coils Coil 764 784 - -
Aip10g03253 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 452 IPR027417 -
Aip10g03253 808 SMART helicmild6 666 751 IPR001650 -
Aip10g03253 808 SMART HIRAN_2 23 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aip10g03253 808 SMART ring_2 562 600 IPR001841 -
Aip10g03253 808 ProSiteProfiles Zinc finger RING-type profile. 562 601 IPR001841 -
Aip10g03253 808 SUPERFAMILY RING/U-box 545 607 - -
Aip10g03253 808 Gene3D - 14 136 - -
Aip10g03253 808 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 638 802 IPR001650 -
Aip10g03253 808 Pfam SNF2-related domain 199 521 IPR000330 GO:0005524|GO:0140658
Aip10g03253 808 Gene3D - 232 455 IPR038718 -
Aip10g03253 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 609 IPR013083 -
Aip10g03253 808 ProSitePatterns Zinc finger RING-type signature. 577 586 IPR017907 -
Aip10g03253 808 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 277 794 - -
Aip10g03253 808 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 10 267 - -
Aip10g03253 808 Pfam Helicase conserved C-terminal domain 635 751 IPR001650 -
Aip10g03253 808 CDD SF2_C_SNF 638 762 - -
Aip10g03253 808 Pfam Zinc finger, C3HC4 type (RING finger) 559 605 - -
Aip10g03253 808 Gene3D - 464 573 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03253 Aip-Chr10 130681343 130685024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03253 11 807 RAD5 or RAD16-like Gene Family AT5G05130 57.075 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip10g03253 SNF2_N 7.9e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03253 K15711 - cit:102608925 948.347