Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03239 ATGGTTCAATATCCAGAAACTCATGAATGCAAATGCGTACACGTAGCCATCCTCGATGGGTGTGGCCGTAACAGCCCACCTCCTCTTGGAACTAAGCCATCAACTTCTCCGCAGTTTTTGCCCTTTTATTACCATAGTACCTCAAATAAGACAGTGAATCTGGAAAAATGTGATCCTCCGATTGTGATCCAAGTTGACACCACCGACACGTTACCTTTATCAAGCGCCACAGGAGACGTTACCTTTATCAAGCGCCACAAGAGAGAGCAAAGTGAGAGTCTTTCCGAGCCCCGTTTCATCAGCCAAGATCCGCCACAGGAGACGTTACCTTTATCAAGCGCCACAAGAGAGAGCAAAGTGAGTGTCTTTCAGCCCCGTTTCATCAGCCAAGATCCCTCTCTTCCAAGGGCTCGGAAAGACTCTCACTTTGCTCTCTCTTTGTGGCGCTTGATAAAGGTAACGGTGTCCAGTGTCGGTGGTGTCGACTTGGATTTCACAATTGGAGGATCACATTTTTTCAGATTCATTGTCTTATTTGAGGTTGAGGGCATAAAACTTTCAGGAGCCGGGCGAAGGCAAATGGTGATGCACCACAATTCCAAGAGGAGGTGGACTGTCACGGCCATATCCATCGAGGATGGCTACGTGGACGCATTTGCATTCATGAGTTTCCTGGATTTTGAACCATTCTCCAATAGAGAAAGTTGGAACTGGTTCATTCAGCGCCCTATAAATCAAGGCCTCGACAGCTGCCACAAGCGACTCGAGGTATTGATGAAGGCAATTTTGTTAAGAAGAACAAAAGACAATGAAATGTTAGGGGTGCTACCAAAAATATTGAGACTCTATATGTTGAACTTAATGAAGAAGAACGTAAAGTCATTGTGCCCCAGTGATCTCGCAAACACATTCCGATTAACTCTTGAAGATGTTTCCAATAACCCACGGTTGTTGCGAAGGTTAGTTGAAACGCTGCAAGAATGTGAAGCTTATGAGTGCCCAATTTGCTCTTCTCCTTCAGCAAACATCGTTATCACCTGCTGTAGTCACATCTTCTGCCGAGTCTGTATTCTGAGAATTATACAATCCAGCGGATCCCCTCATTGTCCTCTTTGCCGTAGAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATCGAGCCTTCTAGAGCTGATAGTACCTCTACATCCTCATCATCGGATAAAGAGTTATCTTCCAAAACATCTGCGTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATCGGTTGTGTTTTCACAATTTCGCAAGGTGTTAGTGTTATTGAAAGTGACGTTGAAGGAGGCTGGTTTCAAGACTTTGCGCATTGATGGCTTGATGACGGCTGAACAGAGGGCTGGTGTTATTGATCAATTTCAAGACACTAAAGAAAATGGACCGACTGTTCTGCTTGCAGGCCTTAGGGTTTCAGGTGCAGATGTAAATCTCACAGCCGCCACCACGGTGTATTTCATGGAGCCATGGTGGAATGCGGCTGTCAAGGAACAGGCAATGGATCGCGTCCATTGCATCGGAAAGAAAGAGGCTGTGAGGATTGTTAGATTGGTTGTTTGGGACAGCATTGAGGAAAAGATGCTGATGTTGCAGGAGGAGAAGAGGGGAAGTCATTCTGGTAGCCTGAAGTATAAAGATCTGAAGTATAAAGATCTAAATTTCCTTATGTCCATAGAATGA 1728 0.4497 MVQYPETHECKCVHVAILDGCGRNSPPPLGTKPSTSPQFLPFYYHSTSNKTVNLEKCDPPIVIQVDTTDTLPLSSATGDVTFIKRHKREQSESLSEPRFISQDPPQETLPLSSATRESKVSVFQPRFISQDPSLPRARKDSHFALSLWRLIKVTVSSVGGVDLDFTIGGSHFFRFIVLFEVEGIKLSGAGRRQMVMHHNSKRRWTVTAISIEDGYVDAFAFMSFLDFEPFSNRESWNWFIQRPINQGLDSCHKRLEVLMKAILLRRTKDNEMLGVLPKILRLYMLNLMKKNVKSLCPSDLANTFRLTLEDVSNNPRLLRRLVETLQECEAYECPICSSPSANIVITCCSHIFCRVCILRIIQSSGSPHCPLCRRALSESDLFSAPIEPSRADSTSTSSSSDKELSSKTSALIKFLKESREQKPTAKSVVFSQFRKVLVLLKVTLKEAGFKTLRIDGLMTAEQRAGVIDQFQDTKENGPTVLLAGLRVSGADVNLTAATTVYFMEPWWNAAVKEQAMDRVHCIGKKEAVRIVRLVVWDSIEEKMLMLQEEKRGSHSGSLKYKDLKYKDLNFLMSIE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03239 575 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 176 274 - -
Aip10g03239 575 MobiDBLite consensus disorder prediction 95 115 - -
Aip10g03239 575 ProSiteProfiles Zinc finger RING-type profile. 333 373 IPR001841 -
Aip10g03239 575 SMART ring_2 333 372 IPR001841 -
Aip10g03239 575 Pfam Zinc finger, C3HC4 type (RING finger) 331 377 - -
Aip10g03239 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 382 IPR013083 -
Aip10g03239 575 Gene3D - 123 267 IPR038718 -
Aip10g03239 575 SUPERFAMILY RING/U-box 317 379 - -
Aip10g03239 575 ProSitePatterns Zinc finger RING-type signature. 348 357 IPR017907 -
Aip10g03239 575 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 315 556 - -
Aip10g03239 575 Pfam SNF2-related domain 173 295 IPR000330 GO:0005524|GO:0140658
Aip10g03239 575 CDD SF2_C_SNF 407 534 - -
Aip10g03239 575 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 566 IPR001650 -
Aip10g03239 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 569 IPR027417 -
Aip10g03239 575 Gene3D - 383 569 IPR027417 -
Aip10g03239 575 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 176 274 - -
Aip10g03239 575 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 315 556 - -
Aip10g03239 575 SMART helicmild6 438 523 IPR001650 -
Aip10g03239 575 MobiDBLite consensus disorder prediction 86 115 - -
Aip10g03239 575 Pfam Helicase conserved C-terminal domain 407 521 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03239 Aip-Chr10 130479553 130482876 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03239 176 574 RAD5 or RAD16-like Gene Family AT5G05130 41.425 7.77e-106 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip10g03239 SNF2_N 2.7e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03239 K15711 - aip:107622939 382.104