Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03238 ATGAATGATTCCGGCAATGTCCATGGTTCCGAGAGCACGAGGTTTGTCCTGGAGTACGAGAACGTAATCCACGTCTACAACAAGCATTCCTGGCGACTCGGCACCTTGAAGACTGCAGTTACCGAAATATTCTCCCCTCTCATGGACCTTGGATTTCCCACCCTCCTCAAAGCCGTCGTCCCGACGTCCATAGACAAATCCCGCCGCTTAAGTATCACCTGCAAGATATTAATTTTCACCAGTCTCAATCTTTCTTCCTTAATCACCCAATATATCCGCAGCTGCCAATTAATTACCCCACTTAACAACGAGTTTATGGAGCCTGCGGCTAAGGAAACCATTGCCCTTAAGAGATTTAAGGCAGTGGACTACATTTTCAGAGACCTCGAGAAGAAGTTGGCTGCTGATCGTAAAGCACTGGAGCCTCCCGAAAGCATTGTGAGGAAGAGGCTTCTGCAGCACAAGAAGGAAGGGCTATGGTGGCTCCTTAACAGAGAGGAAAGCGAGGAGCTTCCGCCGTTTTCGGGAGGGATCTTTGCTGATGAAACGGAGCTCGGAAAGACTCTCACTTTGCTCTCTCTTGTGACGCTTGATAAAGATTCACCGTCTTATTTGAGGTACTATGGTAACAAAAGGACAAAGGCTGCTGAGGAGTTGATGGCTAACGATTTGGTGCTCACTACTTACACTACACTGGCTTTGGAGAATAAAAGGGCCGAGTAG 723 0.4799 MNDSGNVHGSESTRFVLEYENVIHVYNKHSWRLGTLKTAVTEIFSPLMDLGFPTLLKAVVPTSIDKSRRLSITCKILIFTSLNLSSLITQYIRSCQLITPLNNEFMEPAAKETIALKRFKAVDYIFRDLEKKLAADRKALEPPESIVRKRLLQHKKEGLWWLLNREESEELPPFSGGIFADETELGKTLTLLSLVTLDKDSPSYLRYYGNKRTKAAEELMANDLVLTTYTTLALENKRAE 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03238 240 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 118 237 - -
Aip10g03238 240 PANTHER TRANSCRIPTION TERMINATION FACTOR 2 118 237 - -
Aip10g03238 240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 234 IPR027417 -
Aip10g03238 240 Gene3D - 125 216 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03238 Aip-Chr10 130469637 130470513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03238 4 218 RAD5 or RAD16-like Gene Family AT5G05130 33.068 1.06e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip10g03238 SNF2_N 8.3e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03238 K15711 - ahf:114926148 352.443