Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03237 ATGGTGATGCACCTTAATTCCAAAAGGAGGTGGGCTGTCACCACCACACCCACCAAAGATAGCTACGTGGACGCATTTGCATTCATGAGTTTCCTGGATTTTGAACCATTCTCCAATAGAGAAAGTTGGAACCAGTTCATTCAGCGCTCCATAAATCAAGGCCTCGACAGCGGCCACCAGTGCCTAGAGGCAATTTTGTTAAGAAGAACAAAAGACAATGAATTGTTAGGGGTGCCACCAACAACTATTGAGATTCTGTATGTTGAACTTAATGAAGAAGAACGTAAAGTATATAATTGGATAAAAGGTGAAGTGATGCATTTAATGAGGAAGGATACCAAAAGAGTTAAGTTTCCTGCTGTACTAAGTACCATTTTGCATCTTTGCCAAGTCTGTGCTGATGTAGCATTGTGCCCCAGTGATCTCGCAAACACATTCCGTTTAACTCTTGAAGATGTTTCCAATAACCCACTGTTGTTGCGAAGATTACTTGAAACGCTGCAAGAATGTGAAGCTTATGAGTGCCCAATTTGCTCTTCTCCTTCAGCAAACATCGTTATCACCCGCTGTAGTCACATCTTCTGCCGAGTCTGTATTCTGAGAATTATACAATCCAGCGGATCCCCCCGTTGTCCTCTTTGCCGTAGAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATCGAGCCTTCTAGAGCTGATAGTACCTCTTCATCCTCATCATCGGATGAAGAGTTATCTTCCAAAACATCTGCGTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATCGATTGTGTTTTCACAATATCGCAAGGTGTTACTTTTATTGGAAGTGCCTTTGAAGGAGGCTGGTTTCAAGACTTGA 882 0.4229 MVMHLNSKRRWAVTTTPTKDSYVDAFAFMSFLDFEPFSNRESWNQFIQRSINQGLDSGHQCLEAILLRRTKDNELLGVPPTTIEILYVELNEEERKVYNWIKGEVMHLMRKDTKRVKFPAVLSTILHLCQVCADVALCPSDLANTFRLTLEDVSNNPLLLRRLLETLQECEAYECPICSSPSANIVITRCSHIFCRVCILRIIQSSGSPRCPLCRRALSESDLFSAPIEPSRADSTSSSSSSDEELSSKTSALIKFLKESREQKPTAKSIVFSQYRKVLLLLEVPLKEAGFKT 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03237 293 Gene3D - 1 70 IPR038718 -
Aip10g03237 293 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 2 292 - -
Aip10g03237 293 Gene3D - 79 293 IPR027417 -
Aip10g03237 293 Pfam SNF2-related domain 1 135 IPR000330 GO:0005524|GO:0140658
Aip10g03237 293 SMART ring_2 175 214 IPR001841 -
Aip10g03237 293 ProSitePatterns Zinc finger RING-type signature. 190 199 IPR017907 -
Aip10g03237 293 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 2 292 - -
Aip10g03237 293 SUPERFAMILY RING/U-box 168 224 - -
Aip10g03237 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 228 IPR013083 -
Aip10g03237 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 292 IPR027417 -
Aip10g03237 293 Pfam Zinc finger, C3HC4 type (RING finger) 172 219 - -
Aip10g03237 293 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03237 Aip-Chr10 130467622 130469555 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03237 1 291 RAD5 or RAD16-like Gene Family AT5G05130 46.333 1.54e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip10g03237 SNF2_N 5.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03237 K15711 - aip:107622939 556.984