Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03219 ATGAATGACCTTTTGGCTAGCAAATCCTTCGTCTCACGCAATGGCTCGCCGGACGACCATGTCATCGAAATCAACCCTGGCGCGGCGGGAGCCACCCTAGACCAATTCTTCGCCGACGTGGAGGCGACGAAAGATGAAATGAAGAATCTAGAGAACATTTTCCAGAGCCTCAAAAGCCTCAACGAAGAGAGCAAAACCCTTTACGACGCCACCGCCGTGAAGGACCTCCGTTCACGTATGGACGCTGACGTGGCACTTGCCCTCAAGAAAGCCAAGTTCATCAAGCTCAAGCTGGAGACCCTCGAAAGTTCCAACGCCTCCTCCCGCCGCGTCCCCACCTGTGGGCCTGGCTCCTCCTCCGACCGCACACGGATGTCCGTCGTGCATGGGCTGAAGATGAAGCTGAAGAACTTCATGGACGCCTTCAATGGGCTCAGGAACCAGATCTCGGCAGAGTATCGGGACACAGTACAGCGCCGGTATTTCACTATTACCGGCGAGAAACCCGATGAGAAGACCGTTGAGATATTGATCTCCACGGGTGAGAGTGAGTCACTTGTACAAAAAGCCATAGAAGAACATGGAAGGGGAAGAATAGTGGAGACATTGAAGGAGATAGAGGAGAGGCACGATGCAGTGAAAGAGATAGAGAGGAGGCTGATGGAGTTGCAGCAAGTGTTCTTGGACATGGCAGTGTTGGTGCAATCTCAAGGGGAACGACTTAATGACATCGAAAGCTTTGTCACAAAAGCTAACTCCTTCGTGGAGAGCGGTACTCGGCAGGTGGAGGTGGCGGTGAAGACCCAGAAGAGTACCCGCAAATGGACATGCTGTGCCATTATCCTTATTATTCTCATCATCTTCCTCCTCCTCTTTCTCCTCAAACCATGGCAACCTAATAAGGGAGCTCAACTCACCCATGTTGCTCCTAAAACTTTATAG 942 0.518 MNDLLASKSFVSRNGSPDDHVIEINPGAAGATLDQFFADVEATKDEMKNLENIFQSLKSLNEESKTLYDATAVKDLRSRMDADVALALKKAKFIKLKLETLESSNASSRRVPTCGPGSSSDRTRMSVVHGLKMKLKNFMDAFNGLRNQISAEYRDTVQRRYFTITGEKPDEKTVEILISTGESESLVQKAIEEHGRGRIVETLKEIEERHDAVKEIERRLMELQQVFLDMAVLVQSQGERLNDIESFVTKANSFVESGTRQVEVAVKTQKSTRKWTCCAIILIILIIFLLLFLLKPWQPNKGAQLTHVAPKTL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03219 313 PANTHER SYNTAXIN-121 20 292 - -
Aip10g03219 313 Coils Coil 206 226 - -
Aip10g03219 313 SMART SynN_4 28 154 IPR006011 GO:0016020
Aip10g03219 313 PANTHER SYNTAXIN 20 292 IPR045242 -
Aip10g03219 313 Gene3D - 199 295 - -
Aip10g03219 313 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Aip10g03219 313 CDD SynN 33 190 IPR006011 GO:0016020
Aip10g03219 313 Pfam SNARE domain 241 291 IPR000727 -
Aip10g03219 313 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Aip10g03219 313 CDD SNARE_syntaxin1-like 202 263 - -
Aip10g03219 313 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aip10g03219 313 Gene3D - 33 160 - -
Aip10g03219 313 SMART tSNARE_6 198 265 IPR000727 -
Aip10g03219 313 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Aip10g03219 313 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03219 Aip-Chr10 130259148 130260832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03219 1 296 SNARE and Associated Proteins AT1G61290 57.475 3.26e-119 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03219 K08486 - jre:108982862 357.451