Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03217 ATGGATAACGAGATCGACGTTCCTCCGTTCTTTCTCTGCCCAATCTCGCTTGAAATCATGAAGGATCCAGTAACCGTCTCCACCGGCATCACCTACGACAGAGAGAGCATCGAGACATGGCTCTTCTCCGCCAAGAACAACACCTGCCCCGTAACCAAGCAACAACTCTCTTCTTCTGATTTCTCCGATCTAACTCCAAACCACACTCTTCGCCGATTGATTCAGTCATGGTGTACCATCAACGCTTCCCACGGCATCCAAAGGATTCCCACACCTAAACCACCGGTCAACAGAAACCAGATCTCAAAGCTCCTCAAAGATGCTTCCCGTTCCACCACCGTCAACCAGATCAAGTGTCTCAGAAAGCTCAAATCCATTGCTTCTGGAAGCGAAACAAACAAAAGGTGCATGGAAGCTGCTGGTGCCGTTGACTTCTTGGCTTCCGTTGTCAACAACAACATCGATTGTTCTTCTTCTGATCATCACGACGACGACGATGATGATGAAGCTTTGAAGAATAGTCCCTCCGATGAAGCACTAAGCATGCTCTACAATCTTCATGTATCCGAAGCTGGATTGAAGAATCTCATAGGATTCAAGAACGGAGAGTTTGTGAATTCTCTAACGAGGATTTTGCAGAAAGGAACATACGATTCAAGAGCTTACGCAGTTTTCTTGCTGAAATCAATGTGTGAGGTGGCTGAACCGGTTCACCTTCTTCACTTAAGAACCGAGTTATTCGTGGAGCTAGTTCAGGTTTTGAAGGACCAGATTTCTCACAAGGCAACAAAAGCCGCCCTCCACGCTCTGATCCAGATCTCTTCGTGGGGGAGAAACAGCCATGGAGCGGGATTGGCCATTGTTTCCAAGAAGATTCTTAGGGTTTCGACGATGGCGAACGATAGGGCGGTGAGGATTCTTTTGTCCGTGGCGAAATTCTCCGCGACGCCGGTGGTTGTTCAAGAGATGCTGAAGCTTGGTGTGGTGGCGAAGCTGTGCTTGAGTCTTCAGGTGGATAGTGGAAGCAAGACGAAGGAGAAGGCGAGGGAGATTCTCAAGATTCATGCTAAGGCATGGAAGAATTCTCCATGCATACCTACCAATTTGGCTTCTGCATACCCGGCTTTTGCTTAA 1134 0.4806 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIETWLFSAKNNTCPVTKQQLSSSDFSDLTPNHTLRRLIQSWCTINASHGIQRIPTPKPPVNRNQISKLLKDASRSTTVNQIKCLRKLKSIASGSETNKRCMEAAGAVDFLASVVNNNIDCSSSDHHDDDDDDEALKNSPSDEALSMLYNLHVSEAGLKNLIGFKNGEFVNSLTRILQKGTYDSRAYAVFLLKSMCEVAEPVHLLHLRTELFVELVQVLKDQISHKATKAALHALIQISSWGRNSHGAGLAIVSKKILRVSTMANDRAVRILLSVAKFSATPVVVQEMLKLGVVAKLCLSLQVDSGSKTKEKAREILKIHAKAWKNSPCIPTNLASAYPAFA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03217 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Aip10g03217 377 PANTHER WDSAM1 PROTEIN 3 279 IPR045185 GO:0061630
Aip10g03217 377 PANTHER WDSAM1 PROTEIN 280 374 IPR045185 GO:0061630
Aip10g03217 377 SUPERFAMILY RING/U-box 4 84 - -
Aip10g03217 377 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Aip10g03217 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 280 374 - -
Aip10g03217 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 279 - -
Aip10g03217 377 CDD RING-Ubox_PUB 11 54 IPR045210 -
Aip10g03217 377 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Aip10g03217 377 Gene3D - 95 354 IPR011989 -
Aip10g03217 377 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Aip10g03217 377 SUPERFAMILY ARM repeat 101 352 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03217 Aip-Chr10 130227618 130228751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03217 1 375 U-box Gene Family AT3G52450 50.564 3.89e-151 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03217 - - aip:107624094 711.064