Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03200 ATGGCGAAGCAAAGTGTTTATCCTAATAAGGAACATGAAGGGATTGTACACAATTCTTCAGGGCCCTGGTGGAGTCTCTTTGGATCTCAATATGGGGAATCTTGTGGCCAAATGAAACCCTTTTCACTGGAGATTCCCAACTATGTTGATCAAATTGCCACCGGCAAGCAATCGGTGAGAGGAGCTGAAAACATATCTGGGAAAGGACATACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGCCATGTGGTGCACAAAAGCCTCAAGCAGCCCTATCTCTGCAGTCACCACTTGCTGATACCAACACTAGATTCGAGCTAGGATTCAACCAGCCAATGATCTGTGCAAAATATCCATATATGGATCAAATTTATGGGCTCTTCTCACCTTATGGACCTCAAATTTCGGGACGGATAATGCTGCCACTTAGTATGACATCCGATGATGGACCAATTTATGTGAATGCTAAGCAGTACCATGGAATCATCAGACGCCGGCAGTCCCGTGCCAAAGCTGTACTTGATAACAAATTGACAAAACGTCGCAAGCCATATATGCATGAATCACGTCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGCGGTCGCTTCTTGAACACGAAGAATTCCGATGATCAAAATGATAAAAGTGGAAACAAAGTGATCAAAGCTCTTGGCGAACAGTTGCAATCTTGTGGCTCTCAGAGTTCTGAAGTGCTGCAATCTGAGGTTGGAACTCTGAATTCTTCAAAAGAGACTAATGGAAGCAGTCCGAATATTTCCGGGTCAGAGGTGACTAGCATGTATTCACGCGGAGGTCTCGATAGTTTTGCTATCAGTCATCTTGGTTCTGCCGTCACTGTCCACTCTCTAGCGGACATGATAGACGGCGGGCGGGGCATGAATATGATCATGCCCCCCAAATGGGTTGCAGCAGTTGGTGGCAATTGCTGCAACCTTAATGCTTGA 978 0.455 MAKQSVYPNKEHEGIVHNSSGPWWSLFGSQYGESCGQMKPFSLEIPNYVDQIATGKQSVRGAENISGKGHTTQFTIFPDDCKMPCGAQKPQAALSLQSPLADTNTRFELGFNQPMICAKYPYMDQIYGLFSPYGPQISGRIMLPLSMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDNKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNSDDQNDKSGNKVIKALGEQLQSCGSQSSEVLQSEVGTLNSSKETNGSSPNISGSEVTSMYSRGGLDSFAISHLGSAVTVHSLADMIDGGRGMNMIMPPKWVAAVGGNCCNLNA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03200 325 MobiDBLite consensus disorder prediction 198 221 - -
Aip10g03200 325 ProSiteProfiles NF-YA/HAP2 family profile. 150 210 IPR001289 GO:0003700|GO:0006355
Aip10g03200 325 SMART cbf3 149 210 IPR001289 GO:0003700|GO:0006355
Aip10g03200 325 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 153 207 IPR001289 GO:0003700|GO:0006355
Aip10g03200 325 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 5 324 - -
Aip10g03200 325 Gene3D - 150 212 - -
Aip10g03200 325 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 5 324 IPR001289 GO:0003700|GO:0006355
Aip10g03200 325 PRINTS CCAAT-binding transcription factor subunit B signature 153 175 IPR001289 GO:0003700|GO:0006355
Aip10g03200 325 PRINTS CCAAT-binding transcription factor subunit B signature 184 207 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03200 Aip-Chr10 129968738 129972823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03200 1 323 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.412 4.29e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aip10g03200 CBFB_NFYA 7.8e-26 No_clan