Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03199 ATGATGGATAACAATTGTCGTCCTAACCTGTTTTCCGTTCTCCGAAAAAGGAGGGTGTCATTTGCAGAGCTAGCAAGGCAATATGAGATGGCAGCCAACAACAATGATGACGATATCCCAAAAATGAAGAGGAGGATGAAACTACAACTGATAGATGATATGAATTCAAGAAAAGCTACATTCAGAAAGAGGCGTGCCGGGTTGTTGAAGAAGTTGGAGCAGCTCGCCATCCTTTATGACATTCAGGCTTGTATTGCCATCTTTAGTCCAGGGGACAAGAATCCTACGGTGTGGCCGTCGGTGGAGGAGGCTAAAGAGATCGTGGAGAAGTTTGAGGAGATTCCGGAGCCAGAGCGGTCGGGCAGAATGGTAACTCATCAGGAGTACAGGCAACAGAAGGTGATTTGGATGGAGAAGCAACTTGAGAAGCTCAAGAAACTTAACGATTAG 450 0.46 MMDNNCRPNLFSVLRKRRVSFAELARQYEMAANNNDDDIPKMKRRMKLQLIDDMNSRKATFRKRRAGLLKKLEQLAILYDIQACIAIFSPGDKNPTVWPSVEEAKEIVEKFEEIPEPERSGRMVTHQEYRQQKVIWMEKQLEKLKKLND 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03199 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 51 93 IPR002100 GO:0003677|GO:0046983
Aip10g03199 149 Gene3D - 53 135 IPR036879 GO:0003677|GO:0046983
Aip10g03199 149 SMART madsneu2 41 100 IPR002100 GO:0003677|GO:0046983
Aip10g03199 149 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 43 146 - -
Aip10g03199 149 SUPERFAMILY SRF-like 43 132 IPR036879 GO:0003677|GO:0046983
Aip10g03199 149 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677|GO:0046983
Aip10g03199 149 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677|GO:0046983
Aip10g03199 149 ProSiteProfiles MADS-box domain profile. 41 93 IPR002100 GO:0003677|GO:0046983
Aip10g03199 149 PANTHER SERUM RESPONSE FACTOR HOMOLOG 43 146 - -
Aip10g03199 149 CDD MADS_SRF_like 42 124 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03199 Aip-Chr10 129896841 129897548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03199 42 148 Type I MADS-box Gene Family AT1G31640 44.860 1.27e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip10g03199 SRF-TF 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03199 - - aip:107621332 294.278