Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03198 ATGACACCAATCATCAGTGGCTATCCCAATGGATCCCAATGGCTTTCTTCCACCATGTCCAATCAAGAAATGAGCAACACAACAAGTGGGGGGTACATTGGGTCCAGCAACATCACCGGCTATGGGCTATGGCTATGGCATAGGAGTCTCCATTGGGATCCTCTTTTTTATCACCACCATCACCCTAACCTATTACTTCTGCACCAGACACCATCAGCAACACTCCCTCCTGCAGCTCCTAATAGGAGACAGAATGTGCTTGAAGTTAGAATAGATGAAGAATCACTTGTGAGTTATCCAAAGTTGTTGTACTCTGAAGCAAAAAAACTGAAGAAGAATGATTCAACTTGTGCACGCTGTTCTATATGCCTTGCAGATTACAAGGGTAGTGATATGCTTAGGGTGTTACCTGACTGTGGCCACCAATTCCATATCAAGTGCATATATCCATGGCTGAGGCTTCACCCTGCTTGTCCACTCTGCAGAACCTCTCCCATTCCGACGCCTCTTTCAACTCCCTTGCCTCAGGTGAAGTCTCTGGTGGCCAAAATACTAATGGCTAAAGATGGCTAA 573 0.459 MTPIISGYPNGSQWLSSTMSNQEMSNTTSGGYIGSSNITGYGLWLWHRSLHWDPLFYHHHHPNLLLLHQTPSATLPPAAPNRRQNVLEVRIDEESLVSYPKLLYSEAKKLKKNDSTCARCSICLADYKGSDMLRVLPDCGHQFHIKCIYPWLRLHPACPLCRTSPIPTPLSTPLPQVKSLVAKILMAKDG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03198 190 SUPERFAMILY RING/U-box 119 167 - -
Aip10g03198 190 SMART ring_2 120 161 IPR001841 -
Aip10g03198 190 CDD RING-H2_PA-TM-RING 120 162 - -
Aip10g03198 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 166 IPR013083 -
Aip10g03198 190 Pfam Ring finger domain 119 162 IPR001841 -
Aip10g03198 190 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Aip10g03198 190 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 81 179 - -
Aip10g03198 190 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 81 179 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03198 Aip-Chr10 129875883 129877036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03198 91 188 C3H Transcription Factor Family AT2G35910 56.122 3.97e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03198 - - gmx:100811799 158.688