Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03185 ATGGAGAAGGTACCAGGGATGGAAGGCAAGGCTGAGAGTCAAATGACTTCGGCTGAAGCCTTCGTCGAAGGAGGGATTCAAGAATCGTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTCTCCGAAAGTGATCCTTCGACAACCACTGCATGCAAGCATGAGTTTCACCTTCAATGTGTTCTTGAATGGTGCCAGAGAAGCTCTCAGTGCCCTATGTGTTGGCAAACTATTAGCATGAAGGATCCAACCAGTCAAGAGCTGTTTGAGGCAGTAGAACGGGAAAGGAAGTTGAGGGCTATCGCACCAAGGACTGCTGCTATCTTTCACCACCCTGCCTTTGGTGATTTTGGACTGCAGCATTTAGGCATAAGTGATGCTGATCTTGAACAACGAATAATTCAACATTTAGCTGCAGCAGCAGCAGTTGGGAGATCACACCATCATGGTCGGAGGGAAGGGCATCAAACTAGGGCATCTGCTCATGGTCATCCACCCGTTATCGTTTTGTCATCTCAGCCACCGCAAGTCCCTGAATCATCTCCTAGAGGGGGAGATGAACCAGCTACAAATCCTTTAGGAACTCCATCTAGTCCTATGACATCCCGTGGAGGTGAAATATCACGGCAGATCCCACATCTTCAGACTCAAAGCTCTTCTTCAGCTCCTCGGGATAGAGACTCTATTGCGCAATCTTCTCCAGCAAACCAAGATAGAGCAGGGCCATCAGAATCCCAGTCCATTTCTGATTCTCTGCGGGCCCGATTTAGTGCGTTGTCCATGAGATACAAAGAGTCAATTTCAAAAGGCGCAAGGGGATGGAAGGAGAGGCTGTTCTGTCATGGTTCTTCCATGTCAAAAGTTGGCTCAGAAGCTAGGAGAGAGGCTGGAATTGCCGGCGTCACACAATTGGTGCAATCCCAATCTCTTCAAAATAGAGCAACTTATAGAACTGCGACTACCTCTTTGTCAAATCATTTGGAGGATCATCCCACTGGAGAGGTGACCAACCAGAACAGGGGAGCTAGAAGAGAGAATGCATCGCATGATAACACTCCAGCTGCTTGTTCTGCTAGCTCACGTTCAAATTGA 1092 0.4808 MEKVPGMEGKAESQMTSAEAFVEGGIQESCDDACSICLEDFSESDPSTTTACKHEFHLQCVLEWCQRSSQCPMCWQTISMKDPTSQELFEAVERERKLRAIAPRTAAIFHHPAFGDFGLQHLGISDADLEQRIIQHLAAAAAVGRSHHHGRREGHQTRASAHGHPPVIVLSSQPPQVPESSPRGGDEPATNPLGTPSSPMTSRGGEISRQIPHLQTQSSSSAPRDRDSIAQSSPANQDRAGPSESQSISDSLRARFSALSMRYKESISKGARGWKERLFCHGSSMSKVGSEARREAGIAGVTQLVQSQSLQNRATYRTATTSLSNHLEDHPTGEVTNQNRGARRENASHDNTPAACSASSRSN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03185 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 9 360 - -
Aip10g03185 363 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Aip10g03185 363 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 360 - -
Aip10g03185 363 MobiDBLite consensus disorder prediction 191 250 - -
Aip10g03185 363 MobiDBLite consensus disorder prediction 318 363 - -
Aip10g03185 363 MobiDBLite consensus disorder prediction 318 342 - -
Aip10g03185 363 MobiDBLite consensus disorder prediction 140 250 - -
Aip10g03185 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 84 IPR013083 -
Aip10g03185 363 SUPERFAMILY RING/U-box 26 82 - -
Aip10g03185 363 Pfam Ring finger domain 33 74 IPR001841 -
Aip10g03185 363 SMART ring_2 34 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03185 Aip-Chr10 129731155 129734640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03185 31 82 C3H Transcription Factor Family AT4G00335 48.077 1.35e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03185 K19043 - gmx:100800419 441.039