Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03163 ATGGAAGATCAGTTTTTCTCTGAGGGAGAGGGAATTGGGTATTGGACACCTCCTGGCGCTCAATTCGATGGACCAAGCATGATAGACAACGGAATAAAAAATCTTGTATCAGAGGAGAAGCTTGACAACCTCCCTGATCTCATGAACTTCGATAACCTTGCTGGTTGGGGTAATATTCCATCTGTGACTGATCATAATTTAGATAATGGAATTTCATCACTTGCCTCTATGCCGTATTCTCCACCTGATGCATATAGTTTAGTGGAACAGGCCAATGATCCATACTTTATGACAAAAGATTGTGGAAATTATAATGCTATTGAAACCTCCTTGGGTTTCGATGAGAAGGCTGTGTTACAGCAATTGGAGACCCAACTTGGGTTGTCAGAAGATGCAAATGATATGAATAACATAAATGGATCACTTCAAGAATTGAGTGCTGCTGACATGGGAAATTGCTTGGTGCCTAGACCATTTGCTTGGTCGCTTGATGAGAAAATGCTGAGGGCTATGAACTTGTTTAAGGAATCAGTTGGTGATGGAATATTGACACAAGTTTGGGCACCAATGAAGCATGGTAATGACTTCATCTTAAGCACAAGTGAGCAACCCTATTTGCTAGATCACATGCTAGCTGGATATCGAGACGTGTCGAGGGAATTTACCTTTTCTGCTGAAGACAAACCAGGGTCTTTTCCAGGGCTTCCCGGACGTGTGTTTATGTCCCAAATTCCTGAATGGACCTCCAATGTTGGGTACTACAATAAAAGTGAGTACCTGAGGGTGGAGCATGCAATTAATCACGAGGTTCGTGGATCAATTGCGGTTCCCATAATTGATACGCTCGCTGAACCACCTTGTTGTGCTGTACTAGAACTTGTCACTACAAAGGAAAAGCCTGATTTTGACAAAGAACTAGAAATTGTTAGCAGTGCACTCCAGCTTGTTAATTTAAGGACTACTACGTCTCCACGACTTATGTCCCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCGCATAGTTTGCCACTGGCATTGACATGGATCCCCTGTTATTATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGATTAAAGATGGGGGTAAAATTCCTGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCATGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCGCTTCAATTAAATCGTCCATTCTTCTATTCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTATTCATACCAATGATGATGATTACATGATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTCAAGAACAGCAACTTTTATTAGACAATCTATCAGGTACTATGCAGAGAATGTGTCAGAGTTTGAGGACAGTATCGGATGCTAAATTATACGGGATAGAAGGTTCGCAAGTGCAGTTTTCAAAGGAAGAAGGCTCGAGTTTTTGCTCTATGTCTAGGGGAAACTCTCATATGGCGCCGGATGGTGACCATGATTCGGTCCAGCCTATGTCCGTGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGATGGATCAAGAAAGCAGATTGAGAAAAAGAAAAGTCCAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATCAATAAAGTTAATCATTCGTTAAAAAAAATACAAACCGTGCTTGACTCAGTCCAGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAAGGGGGATTTATGCCAGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCTGGAAGAAATGTTCTGGAAAATTTCCTGATCCTGCATCAAAAGATGCAGTCACCGTATCTCCGGCATCTGGTAGCAAAGATTCAAAACCAATAGCCATGGATGATGGTGGATTACGGCAGGAACCCTTTCGGGTTTCTATTTTGGAAAGTTCTAGGTGTGATATAGCCTATCACAGTCCAAACACCCTCGGCGAGCATCACAATCCCACTACTTCAAGCATGTCAGACTCGTCGAATGGCTCTGGCTCTCGGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTCTTGATAAGGGATCAAAAATTAGTGTCAAAGCTGCCTACAAAGAAGATATGATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAACAAGATTCAAATTACGAATCGGATCTTTCCAACTCAAGTATCTCGACGATGAAGACGAATGGATGATGATGGTAAATGACTCAGATGTGGAAGAATGCATAGAAATATTGGATGATCTTGGCACCCGTGCTGTGAAATTTCTTGTTAAGCATGGATCAAAAATTATTGTCAAAGCTGCCTACAAAGAAGATATGATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAACAAGTTGCAACAAGATTTAAATTACAAATCGGATCATTCCAGCTGAAGTATCTCGACGATGAAGAGAAATGGGTGATGATGGTAAATGACTCAGATTTGGAAGAATTCATAGAAATATCGGATGATCTTCGCACCCGTGCTGTGAAATTTCTTGTTAGCGACCTAGTGGTTTGA 2880 0.417 MEDQFFSEGEGIGYWTPPGAQFDGPSMIDNGIKNLVSEEKLDNLPDLMNFDNLAGWGNIPSVTDHNLDNGISSLASMPYSPPDAYSLVEQANDPYFMTKDCGNYNAIETSLGFDEKAVLQQLETQLGLSEDANDMNNINGSLQELSAADMGNCLVPRPFAWSLDEKMLRAMNLFKESVGDGILTQVWAPMKHGNDFILSTSEQPYLLDHMLAGYRDVSREFTFSAEDKPGSFPGLPGRVFMSQIPEWTSNVGYYNKSEYLRVEHAINHEVRGSIAVPIIDTLAEPPCCAVLELVTTKEKPDFDKELEIVSSALQLVNLRTTTSPRLMSQCLSNNKRAALTEIIDVLRAVCHAHSLPLALTWIPCYYSEGIGDEASRIRIKDGGKIPGEKTVLCIEESACYINDIVVGGFVHACVEHYLEEGQGVAGKALQLNRPFFYSDVKAYNISEYPLVHHARKYKLNAAVAVRLRSIHTNDDDYMIEFFLPVNMNGSQEQQLLLDNLSGTMQRMCQSLRTVSDAKLYGIEGSQVQFSKEEGSSFCSMSRGNSHMAPDGDHDSVQPMSVTNNETEAAHNQAMDGSRKQIEKKKSPVEKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNHSLKKIQTVLDSVQGVEGGLKFDPYKGGFMPGGSSNQEINAHKSSLFWKKCSGKFPDPASKDAVTVSPASGSKDSKPIAMDDGGLRQEPFRVSILESSRCDIAYHSPNTLGEHHNPTTSSMSDSSNGSGSRKFENRKHLKAKSPCLDKGSKISVKAAYKEDMIRFKFDPAAGCLQLYEEVATRFKLRIGSFQLKYLDDEDEWMMMVNDSDVEECIEILDDLGTRAVKFLVKHGSKIIVKAAYKEDMIRFKFDPAAGCLQLYEQVATRFKLQIGSFQLKYLDDEEKWVMMVNDSDLEEFIEISDDLRTRAVKFLVSDLVV 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03163 959 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 871 957 - -
Aip10g03163 959 SMART PB1_new 791 873 IPR000270 GO:0005515
Aip10g03163 959 SMART PB1_new 875 957 IPR000270 GO:0005515
Aip10g03163 959 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 746 872 - -
Aip10g03163 959 PANTHER PROTEIN NLP8 871 957 IPR045012 GO:0003700
Aip10g03163 959 Pfam PB1 domain 792 872 IPR000270 GO:0005515
Aip10g03163 959 Pfam PB1 domain 878 955 IPR000270 GO:0005515
Aip10g03163 959 PANTHER PROTEIN NLP8 5 715 IPR045012 GO:0003700
Aip10g03163 959 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 715 - -
Aip10g03163 959 Pfam RWP-RK domain 591 639 IPR003035 -
Aip10g03163 959 PANTHER PROTEIN NLP8 746 872 IPR045012 GO:0003700
Aip10g03163 959 SUPERFAMILY CAD & PB1 domains 872 956 - -
Aip10g03163 959 MobiDBLite consensus disorder prediction 746 777 - -
Aip10g03163 959 MobiDBLite consensus disorder prediction 750 769 - -
Aip10g03163 959 MobiDBLite consensus disorder prediction 702 723 - -
Aip10g03163 959 Gene3D - 788 872 - -
Aip10g03163 959 Gene3D - 873 958 - -
Aip10g03163 959 ProSiteProfiles PB1 domain profile. 791 873 IPR000270 GO:0005515
Aip10g03163 959 ProSiteProfiles RWP-RK domain profile. 571 659 IPR003035 -
Aip10g03163 959 SUPERFAMILY CAD & PB1 domains 786 874 - -
Aip10g03163 959 ProSiteProfiles PB1 domain profile. 875 957 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03163 Aip-Chr10 129311794 129315584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03163 874 957 NLP Transcription Factor Family AT2G43500 63.095 1.08e-27 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip10g03163 PB1 2.3e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03163 - - ahf:112736799 1665.2