Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03150 ATGCTATCCGGTGATACGACCGGAAAGATGAACATCACTGTGAGTCCTGATTATGAAGCACCAATTGAGCTTTACAGAACATCACGTGATATGGGCAGGAATGGAACTCTCAACCAAATGATAAATTTGACCTGGGAGTTTCCTGTTGATTCTGGCTTCAACTACATGCTAAGGCTTCACTTTTGCGAGCTAGACCCAGACATCACTAAAACCAATGACAGAATGTTCAACATCTACATAGCAGGCCAGTTAGCTGAGTACCATGCCACTGTTCTAAAATGGAGCAAGCAAAAGGGAATTGCTGTACAGAGAGACTACGCAGTTATGATCCAAGGCCAAGGGATTACTCAGGAAAAGTTTAACCTTTTACTCCAATTCCATCCTGTATCAGACACATGGTACAGCGACCCTTTCTTGAACGGCCTTGAAATCTTCAAAATTAGTGACCCTGCGTCTAATAACCTGGCAGGACCCAACCCTGACCCTATTCCTCATTCATTTGCCCCACCACACCTCTCTGTCTCTCTTCAAATCTCAATCAAGAGGATCATAATAATCATAATAATCTCTGTTGTCCCTGCTGGATTCATTTTTCATTTCATTCTAGTGTTCTTCATCCGTAGAAAACAGAAGACAAAGAGCATAGCCAACACTCAAACCTTATCATTGCCATCCGCTCTTTGTCGTCGATTTTCCTTGGTTGAGATGAAAACATGCACCAATAACTTCGATGAGCTCCTCCTTATCGGAGTGGGAGGGTTTGGCAACGTGTATAAAGGCTACATCGACGAAGGTTCAACACCAGTCGCGATCAAACGGTTAAAACCGGGTTCACAGCAAGGGGTTCACGAATTCAGGACCGAAATTCAGATGCTCTCTCAACTGCGCCATCTCCACCTTGTGTCCCTTATTGGTTACTGCTGTGAGAGCAACGAGATGCTCTTGGTCTATGATTTCATGGATCGAGGAACCTTACAAGATCATCTCTACAACAATAATAATAACCCTTCCCTCTCGTGGAAGCAACGGTTGCATATCTGCATAGGAGCAGCGAAGGGGTTGCATTATCTCCATGCAGGTGCGGTCCACAATATCATTCACCGCGATGTAAAGAGCACCAACATCTTATTGGATGAGAAATGGGTGGCCAAGGTTTCCGATTTCGGCTTGTCCAAAATAGGACCCTCTGGCATTTCAATAACCCACATCAGCACTGTGGTGAAGGGCAGTCTTGGGTATTTAGATCCAGAATATTATAAACGACAGCGTTTAACTGTGAAATCTGACGTGTACTCCTTCGGAGTAGTGCTGTTTGAGGTGTTGTGTGGGAGGCCGCCTTTGATGAGGACAGTGGAAAAACAACAGATGTCACTTGCTCATTGGGTTGTATGTTGCCATGAAGATGGCACGTTGGATCAGATTGTGGACAAAGCATTAGAGGGTCAGATTGAACCGGAGTGCTTAACGAAGTTTGGTGACATTGCTGTGAGATGTTTGCATGAAGATGGTTCCCAACGACCTTCCATGGATGAAATTGTTTGGTGTTTGGAGTTTGCATTGATACTGCAAGAGAGTGGTGAGACGCATCAAGAACATCTTCTTACTGCACCTGAAATGCTTGAAATTAGCAATGTGTAA 1638 0.4444 MLSGDTTGKMNITVSPDYEAPIELYRTSRDMGRNGTLNQMINLTWEFPVDSGFNYMLRLHFCELDPDITKTNDRMFNIYIAGQLAEYHATVLKWSKQKGIAVQRDYAVMIQGQGITQEKFNLLLQFHPVSDTWYSDPFLNGLEIFKISDPASNNLAGPNPDPIPHSFAPPHLSVSLQISIKRIIIIIIISVVPAGFIFHFILVFFIRRKQKTKSIANTQTLSLPSALCRRFSLVEMKTCTNNFDELLLIGVGGFGNVYKGYIDEGSTPVAIKRLKPGSQQGVHEFRTEIQMLSQLRHLHLVSLIGYCCESNEMLLVYDFMDRGTLQDHLYNNNNNPSLSWKQRLHICIGAAKGLHYLHAGAVHNIIHRDVKSTNILLDEKWVAKVSDFGLSKIGPSGISITHISTVVKGSLGYLDPEYYKRQRLTVKSDVYSFGVVLFEVLCGRPPLMRTVEKQQMSLAHWVVCCHEDGTLDQIVDKALEGQIEPECLTKFGDIAVRCLHEDGSQRPSMDEIVWCLEFALILQESGETHQEHLLTAPEMLEISNV 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03150 545 CDD STKc_IRAK 249 513 - -
Aip10g03150 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Aip10g03150 545 Gene3D Phosphorylase Kinase; domain 1 228 319 - -
Aip10g03150 545 Pfam Protein tyrosine and serine/threonine kinase 249 515 IPR001245 GO:0004672|GO:0006468
Aip10g03150 545 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 213 529 - -
Aip10g03150 545 PANTHER OS07G0166700 PROTEIN 213 529 IPR045272 GO:0004714|GO:0006468
Aip10g03150 545 ProSiteProfiles Protein kinase domain profile. 243 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g03150 545 SUPERFAMILY Protein kinase-like (PK-like) 215 518 IPR011009 -
Aip10g03150 545 Gene3D Transferase(Phosphotransferase) domain 1 320 534 - -
Aip10g03150 545 Gene3D - 2 148 - -
Aip10g03150 545 ProSitePatterns Protein kinases ATP-binding region signature. 249 272 IPR017441 GO:0005524
Aip10g03150 545 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 10 217 - -
Aip10g03150 545 PANTHER OS07G0166700 PROTEIN 10 217 IPR045272 GO:0004714|GO:0006468
Aip10g03150 545 Pfam Malectin-like domain 6 147 IPR024788 -
Aip10g03150 545 SMART serkin_6 243 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03150 Aip-Chr10 129046129 129047766 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03150 13 542 Receptor kinase-like Gene Family AT3G51550 51.418 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Aip10g03150 PK_Tyr_Ser-Thr 4.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03150 - - adu:107471340 841.647