Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03097 ATGGTTGCTAACGCCAGATTCATAACACTGCAGAAGTTACCAATAAAGTTCACTGAAAAATATGGTTCTGGCCTATCAAACCCATTGTATCTTAAGCCTCCGGATGGTACTGAATGGAGAGTAGATTGGACTAATCAGGATGGTGAAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTATGGTTTGATTATAATATTGGAACTTCTCACATGGAAGTACACATATTTGACATGGGTTGCCTCCAAATAGAGTATCCTGACAATGATCAGATCAAAGAGCAGCTGCCACGCAGAGATCAGCAGTCAGTGAAAAGGCCAGAAGAACAAAAAACTAGACATGTGGATAGCAGTCCCAGCACCCAAAACATGAGACTTAACGAGGGACCGCAGAAGAAAAGATTGAATGAATTGCCAAGAGAAGTCCGGGGCCAACCGACTAAAAAACTGAGAGCACTAGTGTCATCTGCTTCTAAAAGTAGACAATTGGAAAATGACACACAAATCAGGGATGTTGAAAGAAGCCTCAATTCACACGGTATTAAATCCAAAGAGAAAAACCGTGAGATGCTAGTGTCTGTCAATCAAGATTATAATGGCAAAAGGAATAGAAGAAGAAAAGATTCTGAATCTTCTATTAGGCCCTGTCCTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTAAATGGGAAAAGCCCACTTTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGAAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTGTTGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCTAGTCAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAGGATCCGGTGTTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTTCCAAACCAGTGACTCATGTGATTCAGCTCCCAAAAGAAGTTAAGGAGCTCAACTCACAGAATCCCTCTTTCATGGTTAAGATAAGAGACAGTGATCCAAGAAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAGTATTTTAAAAAGAATCAGCAGGATGTAAAATTACAGTTCGGAAAGGAGTCGTGGCCTGCTACGATAATCTACAATCCGACATCGAAAAACAGCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATGAAAAAGATCTGTTTGATGTTCATATTTGTAGAGCCCAATGCTAG 1398 0.3948 MVANARFITLQKLPIKFTEKYGSGLSNPLYLKPPDGTEWRVDWTNQDGEILFKKGWKEFVAYYSLDHGHLLWFDYNIGTSHMEVHIFDMGCLQIEYPDNDQIKEQLPRRDQQSVKRPEEQKTRHVDSSPSTQNMRLNEGPQKKRLNELPREVRGQPTKKLRALVSSASKSRQLENDTQIRDVERSLNSHGIKSKEKNREMLVSVNQDYNGKRNRRRKDSESSIRPCPARPESLKEAKKFKWEKPTFIIKITQRSQTRAPCYFSTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARASQLQAGDVCLFKLINRKDPVFDVHICRRQRRESLSKPVTHVIQLPKEVKELNSQNPSFMVKIRDSDPRRSRPNLSAIFYRKYFKKNQQDVKLQFGKESWPATIIYNPTSKNSFISAGWSSFARASKLEAGDVCVFELINEKDLFDVHICRAQC 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03097 465 MobiDBLite consensus disorder prediction 106 229 - -
Aip10g03097 465 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 339 - -
Aip10g03097 465 MobiDBLite consensus disorder prediction 174 201 - -
Aip10g03097 465 SUPERFAMILY DNA-binding pseudobarrel domain 363 463 IPR015300 -
Aip10g03097 465 ProSiteProfiles B3 DNA-binding domain profile. 1 90 IPR003340 GO:0003677
Aip10g03097 465 PANTHER B3 DOMAIN-CONTAINING 352 463 - -
Aip10g03097 465 ProSiteProfiles B3 DNA-binding domain profile. 287 341 IPR003340 GO:0003677
Aip10g03097 465 PANTHER B3 DOMAIN-CONTAINING 12 339 - -
Aip10g03097 465 CDD B3_DNA 368 462 IPR003340 GO:0003677
Aip10g03097 465 ProSiteProfiles B3 DNA-binding domain profile. 369 464 IPR003340 GO:0003677
Aip10g03097 465 SUPERFAMILY DNA-binding pseudobarrel domain 241 340 IPR015300 -
Aip10g03097 465 MobiDBLite consensus disorder prediction 209 229 - -
Aip10g03097 465 MobiDBLite consensus disorder prediction 140 157 - -
Aip10g03097 465 Gene3D - 355 464 IPR015300 -
Aip10g03097 465 Gene3D - 228 342 IPR015300 -
Aip10g03097 465 SMART B3_2 370 464 IPR003340 GO:0003677
Aip10g03097 465 SMART B3_2 7 90 IPR003340 GO:0003677
Aip10g03097 465 SMART B3_2 246 341 IPR003340 GO:0003677
Aip10g03097 465 MobiDBLite consensus disorder prediction 106 125 - -
Aip10g03097 465 CDD B3_DNA 13 88 IPR003340 GO:0003677
Aip10g03097 465 SUPERFAMILY DNA-binding pseudobarrel domain 12 97 IPR015300 -
Aip10g03097 465 CDD B3_DNA 261 339 IPR003340 GO:0003677
Aip10g03097 465 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 352 463 - -
Aip10g03097 465 Pfam B3 DNA binding domain 257 341 IPR003340 GO:0003677
Aip10g03097 465 Pfam B3 DNA binding domain 385 463 IPR003340 GO:0003677
Aip10g03097 465 Pfam B3 DNA binding domain 12 88 IPR003340 GO:0003677
Aip10g03097 465 Gene3D - 4 91 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03097 Aip-Chr10 128151279 128153499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03097 360 455 B3 DNA Binding Superfamily AT3G18990 31.959 7.91e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03097 B3 1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03097 - - adu:107471893 790.415