Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03096 ATGGCTTCCTCTGCCTGTTTCTTCAAGATTGTTCTCAGACAAAACCTTGAAGATGGAAACCTTGAGGTACCAAAAACGTTCAGTATGAAACATGGTGACAGTGTTCCAAATCCAGTGTATCTGAAGCCTCGAGATGGCACTGCATGGAAGATAGATTGGTCTGAGTATGATGGTGCGATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATCATGGCCATTTGCTGTGGTTTGAGTACAATCAAACTTCTAACATTGAAGTAAACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCATGGATCACATCAGCGATGATGATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTCTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTGAAGTAGTGAAATGGTGCCCTGAAATAGACTATCCTTCGAAGGACCACATTGATGATGACAACATGGTTATGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGGCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTGCTTGTACAAGTAAAATGTTCACAAGTTCACGAAGAGGCCGAGGCCGGCCGAGGAAGACAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAAAGAAGTGAAATGGTGCCCTGAAATACACTATCCTTCCAAGGACCACATTGATGATGACAACATGGTTGTGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAACAGAGAAAGCAGCACCAAACACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCATGACTAGAGTAGTGAAATGGTGCCCTGAAATAGACTATCCTTCACGAAGAGGCCGAGGCCGACCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTTCTTGTACAAGTAAAATGTTCACAAGTTCTGCCAAAGCTAGAGTAGTGAAATGGTGGCGTGAAAAAGACTATCCTTGCAAGGACCACATTAATGATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGAAAAACAGGGAAAGCAGCACTAAAGACACCATCTGCTTGTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACCACATTGATGATGACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGAAAGCAGCAGCAGAAGTATCATCTCCTTCTACAAGTAAAATATTGATGAGTTCTGTCAAAACTGGAGATGTAGAGAAGGGCCCTGATAAACAAAACTGGATGCAGTGTTGCAAGAATGAAGAAGCTAGTCAATCTGAATGA 1464 0.4447 MASSACFFKIVLRQNLEDGNLEVPKTFSMKHGDSVPNPVYLKPRDGTAWKIDWSEYDGAILFENGWKEFASYYSLDHGHLLWFEYNQTSNIEVNIFDMTCLEIDYPSMDHISDDDSIEILNELPPRGWPRKTEKAAPKTPSPSTSKMFTSSAKTEVVKWCPEIDYPSKDHIDDDNMVMVENEPPRRGRGRPRKTEKAAPKTPSACTSKMFTSSRRGRGRPRKTEKAAPKTPSPCTSKMFTSSAKTKEVKWCPEIHYPSKDHIDDDNMVVNEPPRRGRGRPRKTEKAAPNTPSPCTSKMFTSSAMTRVVKWCPEIDYPSRRGRGRPRKTEKAAPKTPSSCTSKMFTSSAKARVVKWWREKDYPCKDHINDEPPRRGRGRPRKTGKAALKTPSACTSKMFTSSAKTRCPEIDYPSKDHIDDDNMVKVENEPPRRGRGRPRKKLKAAAEVSSPSTSKILMSSVKTGDVEKGPDKQNWMQCCKNEEASQSE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03096 487 MobiDBLite consensus disorder prediction 362 376 - -
Aip10g03096 487 MobiDBLite consensus disorder prediction 170 197 - -
Aip10g03096 487 MobiDBLite consensus disorder prediction 170 244 - -
Aip10g03096 487 PANTHER B3 DOMAIN-CONTAINING 5 191 - -
Aip10g03096 487 SMART AT_hook_2 185 197 IPR017956 GO:0003677
Aip10g03096 487 SMART AT_hook_2 431 443 IPR017956 GO:0003677
Aip10g03096 487 SMART AT_hook_2 214 226 IPR017956 GO:0003677
Aip10g03096 487 SMART AT_hook_2 274 286 IPR017956 GO:0003677
Aip10g03096 487 SMART AT_hook_2 319 331 IPR017956 GO:0003677
Aip10g03096 487 SMART AT_hook_2 373 385 IPR017956 GO:0003677
Aip10g03096 487 MobiDBLite consensus disorder prediction 123 149 - -
Aip10g03096 487 SUPERFAMILY DNA-binding pseudobarrel domain 5 98 IPR015300 -
Aip10g03096 487 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Aip10g03096 487 MobiDBLite consensus disorder prediction 315 344 - -
Aip10g03096 487 MobiDBLite consensus disorder prediction 408 433 - -
Aip10g03096 487 CDD B3_DNA 6 97 IPR003340 GO:0003677
Aip10g03096 487 PRINTS High mobility group protein (HMGY) signature 371 383 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aip10g03096 487 PRINTS High mobility group protein (HMGY) signature 420 439 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aip10g03096 487 SMART B3_2 7 99 IPR003340 GO:0003677
Aip10g03096 487 MobiDBLite consensus disorder prediction 388 402 - -
Aip10g03096 487 MobiDBLite consensus disorder prediction 256 284 - -
Aip10g03096 487 Pfam B3 DNA binding domain 8 97 IPR003340 GO:0003677
Aip10g03096 487 ProSitePatterns HMG-I and HMG-Y DNA-binding domain (A+T-hook). 211 222 IPR000637 GO:0006355
Aip10g03096 487 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 191 - -
Aip10g03096 487 MobiDBLite consensus disorder prediction 256 299 - -
Aip10g03096 487 MobiDBLite consensus disorder prediction 362 473 - -
Aip10g03096 487 MobiDBLite consensus disorder prediction 229 243 - -
Aip10g03096 487 Gene3D - 2 100 IPR015300 -
Aip10g03096 487 PRINTS AT-hook-like domain signature 185 195 IPR017956 GO:0003677
Aip10g03096 487 PRINTS AT-hook-like domain signature 272 283 IPR017956 GO:0003677
Aip10g03096 487 PRINTS AT-hook-like domain signature 317 327 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03096 Aip-Chr10 128147419 128150435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03096 7 155 B3 DNA Binding Superfamily AT3G18990 28.313 2.94e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03096 B3 1.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03096 - - ahf:112783425 879.396