Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03095 ATGCCAAATCCAGTGAAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCGTGATGGTGAGATTTTGTTTGGAAAGGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAACGGAACTTCTAACATCAAAGTAAACATATTCGACATGAGTGCCCTCGAAATTGATTATCCTTCCAATGGCCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGCCACGAAGGGGCCGAGGCCGGCCGAAGAAAAAAGTGATAGCAGAACCAAAGCAATCACGTGCTTCTACAAGCAAAACAATGAAAAGTGCCATCAAAGCTAAAGATATAGATAAAAATCCCAATACACAAAACTTGAAGCTGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGACAGCAGATCTTAAGCTGCCAATAATTCAACGTGCCAGACCAGATATGGATGAAGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATAAAAATTAAGCAAAAGCACCAAACAGGATCACCAGCAAATATTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCAAATAGGAAGAATGCCCTTATCTCTAATTGGCGCTTGTTCCTTGAAGAAAATAACTTAAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGACAAGGTCCAGATCTTAAGGTTCATATTCGTCGAAGCCATGATTAG 834 0.4029 MPNPVKLQPPDGTEWRIDWTNRDGEILFGKGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMSALEIDYPSNGRIGDDNSVEILDEPPPRRGRGRPKKKVIAEPKQSRASTSKTMKSAIKAKDIDKNPNTQNLKLHVENEKDGQSEETADLKLPIIQRARPDMDEVIREAKKFKSKNPSFVIKIKQKHQTGSPANIPVCFFRMYFENTKQYAILRVGKKQWHATLIYYPNRKNALISNWRLFLEENNLKAGDVCIFELINRQGPDLKVHIRRSHD 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03095 277 SUPERFAMILY DNA-binding pseudobarrel domain 175 275 IPR015300 -
Aip10g03095 277 Pfam B3 DNA binding domain 5 63 IPR003340 GO:0003677
Aip10g03095 277 Pfam B3 DNA binding domain 197 275 IPR003340 GO:0003677
Aip10g03095 277 SMART B3_2 182 276 IPR003340 GO:0003677
Aip10g03095 277 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Aip10g03095 277 Gene3D - 162 277 IPR015300 -
Aip10g03095 277 Gene3D - 1 66 IPR015300 -
Aip10g03095 277 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Aip10g03095 277 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 275 - -
Aip10g03095 277 CDD B3_DNA 198 274 IPR003340 GO:0003677
Aip10g03095 277 MobiDBLite consensus disorder prediction 78 119 - -
Aip10g03095 277 CDD B3_DNA 2 63 IPR003340 GO:0003677
Aip10g03095 277 ProSiteProfiles B3 DNA-binding domain profile. 221 276 IPR003340 GO:0003677
Aip10g03095 277 PANTHER B3 DOMAIN-CONTAINING 2 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03095 Aip-Chr10 128145573 128146613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03095 5 277 B3 DNA Binding Superfamily AT3G18990 25.658 7.90e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g03095 B3 7.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03095 - - ahf:112784504 536.184