Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03089 ATGAATAACCGTGTTGATCTGGTGGAGAAAATCACTCTGTGGAGAGAATCATGGAAAGTGCATGTTAAAATTGTGAAGTTGTGGTACCACAAGAATCCTACTTTGGATCCTTCTCAAAATCTGTTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAGGCAACCATTAGAGATCAGCTTACATCAAATTTTGCGGTGTCTCTAAATGAAGGGAATGTGTACTTGATGACCCATTTTACAGTTGTATCGAATACTGGTTTGAACAAAGTGACAAAACATCGGTTCAGACTTTTGTTCCAATACAAGATCTCTGTTGTTTCTGTGGTATCTCCAAGGATACCTCATTCGGGTTTGTGTTTTGTATCAATAGATGAAATTGATCAAATGACAAAGGATGATAATTTTCTCATTGACTTTGTTGGGATCATTACTGGTGTTCGAAAAGAAAGAGATGTAGCATCATATGGGAAGCTTATCAAAGCAGTGGTGCTAGAAGTCTTTACTGATGGCAAAAGGGTACAATGCAATGTGTTTGGAAATGCTTGTGATCTGTTGGAATATGATAACTTACAAAAATATCCAAGATCTCTGCTGATTGTCCTCGAGTCTTTTAAAATCAAAGCAATTGAAGGTGGGGTAATCCTACAGAATGTGATAAATGTCTCTAGGTTATTCATTAATCCTAACATTTCTGAGTTTGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGACTTGTGACCAATGACCCTGGATACTTAGTTTCTAAAGTTGATGGTGATTATTTCAATCCCAAAGATATCAGTAATATTCAAGATCTTCATTCAGATAATGGGGATTCTCATTACTTTGTTATTGGGACAATTAAGGAAGTTATGGATGAACCAGATTGGTGGTACTACTCATGTGTGTGTGGTCATGCCGTTGTTGAGCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAACATGTTATGGTCAAATATGGGATTCGGGTAAAGATTCAGCATGGTGGGTGTGCTGTTTTGTTTGTTCTGCTTGATAATGCAGCAACAAAACTATTTGGAAAAATCTGTTCTGAAGCATTTCTCAGGATAGAAGAAGAATTTCCTGTTGATCCTAGTGTGCTTGCAGTATGA 1167 0.3745 MNNRVDLVEKITLWRESWKVHVKIVKLWYHKNPTLDPSQNLLHMVLMDEKLHKIQATIRDQLTSNFAVSLNEGNVYLMTHFTVVSNTGLNKVTKHRFRLLFQYKISVVSVVSPRIPHSGLCFVSIDEIDQMTKDDNFLIDFVGIITGVRKERDVASYGKLIKAVVLEVFTDGKRVQCNVFGNACDLLEYDNLQKYPRSLLIVLESFKIKAIEGGVILQNVINVSRLFINPNISEFVEFLSRFSVASYGFSRLVTNDPGYLVSKVDGDYFNPKDISNIQDLHSDNGDSHYFVIGTIKEVMDEPDWWYYSCVCGHAVVEHEDLYLCDACGSCVEHVMVKYGIRVKIQHGGCAVLFVLLDNAATKLFGKICSEAFLRIEEEFPVDPSVLAV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03089 388 Gene3D - 114 248 IPR012340 -
Aip10g03089 388 Gene3D - 263 384 IPR012340 -
Aip10g03089 388 Pfam Domain of unknown function DUF223 44 128 IPR003871 -
Aip10g03089 388 SUPERFAMILY Nucleic acid-binding proteins 122 244 IPR012340 -
Aip10g03089 388 SUPERFAMILY Nucleic acid-binding proteins 8 104 IPR012340 -
Aip10g03089 388 CDD RPA1_DBD_A_like 19 102 - -
Aip10g03089 388 PANTHER REPLICATION FACTOR A 1, RFA1 21 370 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g03089 388 SUPERFAMILY Nucleic acid-binding proteins 270 374 IPR012340 -
Aip10g03089 388 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 21 370 - -
Aip10g03089 388 Gene3D - 7 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03089 Aip-Chr10 128045851 128047939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03089 1 365 Core DNA Replication Machinery Family AT5G08020 21.739 1.14e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03089 - - aip:107615091 709.138