LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g03075	ATGTTCCCGTCGCTTCGTCAGGTTAGCTTGCACCGCAATCTTGACAAAACCACCCACAACAAGGAGAATTCCGTAACTTCACCTCACTTCCGGCGCCGCCACCGCCGTGGTGGGGGTCGCCTCGTCCGGCCGCCGCGGCATCGGACTGTCGAACACTATCCACTCCGAGGTTGNNNNNNNNTGCTCCAGCACACCGATGTGTCGTACTTAAACTTAAGAGATGATAACAGCAGTGGTTCGTATATGTACATTGAGCCATTGGAACTCCATGATGAGGTTCTCAGGTGCAATCCTGAAGCATTTGAATACAGTACCACAGGTCCTGTCAAGGAGCAGATCTCTGGTCGTGCGGTGGGTGAGAAGAAGCTCCGTGAGTCAAGTCTTCCTGGCATAAATCAAACTAAAGAAGACTACAATGCAACCCCTAATCGTCAACATGACCATTTTTCTTCAAATGACATTTCAACGTTATCTTCCAAAAAATCAAAAGTAAGGAAGAAAGGAGGCGATGGAATTTCCGTAGGGCCCAGTTCTGCCGAGCTTCAAGATGCAACCATTGGAAGGTTTCGTGAGTTTTTGGAAGACTTATGCAACAAAGCTGAAGTTCAGACTGATGATCGAGATGAAGCAGAATGGCTGCCATTGTCACTTTCAGATCTTAGATTGCTTGTTAATGAAATAATGTCTATACATGAGAAGAAACTTCTGCATATTGTTCCTGTTGAAGTCCTTGTGAGGATACTGAATGTTCTAGATCATCAAATACATAGGGCAGAAGGCCTGTCAATTGAGGATTGTGATAATTCAGACTCGGAACTAATTTCATCTATTTTGATCGCATTGGAGTCCATTCATGCTGCACTAGCTGTGATGGCTCACACTGAGATGCCGAAGCAAATTTATAAAGAAGAGATCATTGAGAGAATTTTGGAGTTTTCCAGGCGTCAAATAATGGATGTTATGTGTGCAAGTGATCCATCGTATCGTGCGTTACACAGACCTAGTGAAAACACTGCATGTGAAGTTGATGATTATTACGAAGAAAATGATGCAGAATTTGGTTCGGCAAGCAAGAAACGTCGTACCAGCAAGAGTACAAAGATGAGGAAATCAACATCAAACAGGGTTTCTTCTGCTGTGAATACTATCCTTCAGAAATTATGCACTGTTCTTGGATTGCTGAAGGATTTGTTGTTAATTGAGAGGTTATCAGATAGTTGCATTCTTCAACTTGTAAAAACAAGCATTACAACATTCCTGGTTGAGAATATCCAGCTTTTGCAGCTGAAGGCAATTGGTTTACTTAGCGCGATATTCTATTTATACACACAACATCGCACATATGTGATAGATGAAGTGCTTCAGCTTCTTTGGAAATTACCATATTCAAAACGAGCTATAAGAGCCTACCACATACGCGAGGAAGAGCAAAGACAGATCCAGATGGTTACCGCTTTGCTGATTCAGCTAATTCACTGTAGTGCTAACCTTCCCGATGCTTTAAGACAAGCATCAAGTGGTAATGCTGTGTTGGAAGTCTCGGTTGACCCTAATGATCCAATTAAAGGCCATGAAGCCACAACAGAAGCTTGCTGTCTATTCTGGAGCCGTGTACTTCAGCGGTTTGCAAGTGTGAAGACCCAGGATGCTTCAGAGCTGAAATCCATAATGGAGAATCTTGTTACTGATTTACTCACAACTTTAAATTTGCCCGAGTATCCTGCTTCAGCTCCCATTTTGGAGGTTCTCTGTGTCCTACTACTTCAGAATGCTGGGCCGAAATCTAAGGATGTCTCTGCACGTTCCATGGCTATTGATATTCTTGGTACAATTGCCGCAAGGTTGAAGCGTGATGCTTTGGTTTGTAGCCAGGAGAAGTTCTGGATACTTCAGGATTTACATGGTCAGGATAGTGCTAATCAGCAATATCCAGAAGATTCTTGTTGTGTCTGTATGGATGGCAGTACCGACAATTTATTGATATGCCATGGCTGCCAGAGACCCTTCCACAGTGACTGCCTGGGTATTAAAGAACATGAAGTTTCCAACCGGAACTGGTACTGTCAGACATGCATTTGTCATAAGCAACTGCTTGTATTACAGTCATATTGCAATTCCCGGTGTAAGGATGACGTGACAAAGAAACGTAATGCGTCAAAAGATTCTGAAATTTCAAAGCATGAAATTGTTCAACAGTTGCTTTTGAATTACCTTCAAGATGTCACTTCTGCTGATGATATCCATCTGTTCGTTTGCTGGTTTTATCTCTGCCTGTGGTACAAAGATGATCCTAATTGTCAGCGAAAGCCTATATACCACCTTGCTAGAATGAAATCAAGAATCATTGTACGGGACTCTAGTACCATCTCATCCACGTTGACGAGGGATTCAATTAAGAAGATTACTTTAGTTTTGGGTCAAAACAGTTCATTTTGTCGAGGGTTTGATAAGATTCTTCACGTGCTTCTGGCAAGCCTGAGGGAGAACTCTCCAGTTATCAGGGCTAAGGCTTTACGAGCTGTTAGTATCATTGTAGAGGCTGATCCAGAGGTATTGGGTGATAAACGAGTACAGTCAGCTGTTGAAGGAAGGTTTTGTGACTCTGCAATTTCTGTTAGAGAAGCAGCATTGGAACTTGTCGGCAGGCACATTGCTTCACATCCAGATGTGGGTTTTAAGTATTTTGAAAAGATCGCTGAGAGAATCAAAGATACTGGAGTTAGTGTTCGAAAACGAGCAATAAAACTTATTCGAGACATGTGCAGTTCAAATGTCAACTTCTCTGGCTATACTAGGGCTTGCACAGAAATAATTTCGCGCATTAGTGATGATGAGTCAAGTATCCAGGACCTTGTTTGCAAAACGTTTCATGAGTTCTGGTTTGAGGAGCCTTATGGTTCACAAACTCAGGTCTTTGGAGATGGTAGTACTGTTCCACTCGAGGTGGCTAAGAAAACAGAGCAAATTGTTGAAATGCTCAGGAGAATGCCCAACAATCAACTTCTTGTAACTGTAATAAAGCGCAACTTATCACTTGATTTTTTGCCCCAAGCTGCAAAAGCTGTTGGTGTCAACCCTGTGTCCCTTGCTACAGTGCGTAAGCGCTGTGAGTTAATGTGCAAATGCTTGCTGGAGAAGATATTGCAGGTTGAGGAAATTAATAGCAATGAAGTGGAGGTGCATGCTCTACCATATGTGCTGGCCTTGCATGCATTTTGTCTTGTGGACCCAACTCTCTGTGCACCTGCTTCAAACCCATCCCAGTTTGTTGTTACTTTGCAGCCATATCTTAAAACGCAGGTTGACAATCGCATGGTTGCACAGCTAGTTGAGAGTATAATCTTTGTAATTGATGCTGTGTTGCCTTTACTTCGGAAGTTACCTCCAAATATTGTTGACGAGCTAGAGCAAGATTTGAAACATATGATTGTCCGGCATTCTTTCTTGACAGTAGTCCATGCTTGTATCAAGTGCCTCTGCTCTGTAAGCAACATAGGCAGTAAAGGGGCTGCTGTGGTGGAGCATCTTATTCAGGTCTTCTACAAATGTTTGGACAATAAGCAGCAAGTTGGGCGATCACTCTTTTGTCTTGGATCACTCATTCGATATGGCAATTCTTTGTTGGTAAGCTCCAGCAATAAAGTTATTGATGTCAGAAGGAGTCTTACCTTGTGTATAAAGTTTCTCTCTGAGGAGGATTTTGTTGTTAAGGCTAGATCATTGCAGGCACTAGGGTTTATTTTAATTGCCAGGCCTGAATACATGTTGGAAAAGGATATTGGAAAGATACTGGAGGGAACATTATCTTCAAATGCTGACACTCGTCTTAAGATTCAAGCATTGCAAAACATGTTGGAGTATCTCCTTGATGCTGAAAGCAAAATGGGAACAGATAAACCTGATGATAACATAACTGGTTACACAGTTGGAGCTGTGCAGAGTGTACCCGTTGCTGCTGGAGCTGGGGACACAAACATATGCGGGGGTATAATTCAGTTATATTGGGATAATATTTTAGGCAGATGTTTGGATTCCAATGAACAAGTCCGCCAATCAGCTCTGAAGATAGTTGAAGTTGTGTTGCGCCAAGGTCTTGTTCACCCAATCACTTGTGTTCCATACCTAATAGCACTTGAAACTGATCCTCTGGAGTCAAATGCAAAGCTGGCTCATCATCTCCTAATGAATATGAATGAGAAGTACCCTGCATTTTTTGAAAGTCGTTTGGGTGATGGACTTCAAATGTCATTTATTTTCATGCAATCAATTAGCACTGCTTCTGAAAATGGCAATCAGAAAATCCCATCTAAAATCCCTGTATCTGGAAAAGGGAAAACCGAATCTGTCTCACTAGCTCAAGCAAGACTTGGTGTTTCTAGAATATACAAGCTCATCCGGGGGAACAGGAATTCAAGGAATAAATTTATGTCATCAATTGTGCGAAAATTTGACAATCCAAAGTGGAGCCATTCAGTAATAGCTTTCTTATCATACTGCACAGAGGTCCTTGGATTGCTGCCTTTCATTTCCCCTGATGAGCCCCTTTATCTAATATATGCCATCAATCGAATAGTTCAAATTAGGGCTGGGCCACTAGAAGCGAATTTTAAAGCCTGGAGTTCAAGGTTATCAAGAAATGAGAATCAAAGTACACCGAATGGGAATGGAATGTATCAACAGGAGACAGACAAGTCCACTATTATAACCCAAGGAACATCAATGGATTTGAATGGAACATTTCAGCAAAATCTAGATGCTCATCCAGATTTGAATGACATGAGATCAGTGGATTTAAATGGAACATTCTACCAACAGCCAGATGATACTTTATCGAATAATGGCAGCTCCGAACCAAAGCTGCATGCTGTGGGTTCTGATTATTTTGCCTTCTCAAAAGATGATCTGGAGAGAGTTCAGGCAGACTGCTTATCAGCAATTGCACTGCAATTTCTCCTAAAATTGAAGAGACATCTGAAAATCATGTATAGTCTCAATGATGCTAGATGTCAGGCATATTCACCAACTGAACAGCCAAAACCTGGAGAAGTTATCTCCAGACAGAATATCCCATTTAATATTAGTGAAACTCAGTTCAGCGTGCCTTCAAATCCACAAGAATTAATACAGAGATACCAGGAATTTAAGTATGCATTGAGGGAAGATACGGTGGATTATTCACTGTACACTGCAAATATAAAACGGAAGCGACCTACACCCAGAAAAGTTCGGAGATCTGGACCCATGGCTAGTGGGGACTTGGAGGATGATGATGATGATGATGATTGGGGTGGTGGAATGCGCAAGATCACAAGTAGTGGTGGCCGTAGAGCTAACCTTAGAAGCAGCAGTAGGCAATATTGA	5361	0.4197	MFPSLRQVSLHRNLDKTTHNKENSVTSPHFRRRHRRGGGRLVRPPRHRTVEHYPLRGXXXXLQHTDVSYLNLRDDNSSGSYMYIEPLELHDEVLRCNPEAFEYSTTGPVKEQISGRAVGEKKLRESSLPGINQTKEDYNATPNRQHDHFSSNDISTLSSKKSKVRKKGGDGISVGPSSAELQDATIGRFREFLEDLCNKAEVQTDDRDEAEWLPLSLSDLRLLVNEIMSIHEKKLLHIVPVEVLVRILNVLDHQIHRAEGLSIEDCDNSDSELISSILIALESIHAALAVMAHTEMPKQIYKEEIIERILEFSRRQIMDVMCASDPSYRALHRPSENTACEVDDYYEENDAEFGSASKKRRTSKSTKMRKSTSNRVSSAVNTILQKLCTVLGLLKDLLLIERLSDSCILQLVKTSITTFLVENIQLLQLKAIGLLSAIFYLYTQHRTYVIDEVLQLLWKLPYSKRAIRAYHIREEEQRQIQMVTALLIQLIHCSANLPDALRQASSGNAVLEVSVDPNDPIKGHEATTEACCLFWSRVLQRFASVKTQDASELKSIMENLVTDLLTTLNLPEYPASAPILEVLCVLLLQNAGPKSKDVSARSMAIDILGTIAARLKRDALVCSQEKFWILQDLHGQDSANQQYPEDSCCVCMDGSTDNLLICHGCQRPFHSDCLGIKEHEVSNRNWYCQTCICHKQLLVLQSYCNSRCKDDVTKKRNASKDSEISKHEIVQQLLLNYLQDVTSADDIHLFVCWFYLCLWYKDDPNCQRKPIYHLARMKSRIIVRDSSTISSTLTRDSIKKITLVLGQNSSFCRGFDKILHVLLASLRENSPVIRAKALRAVSIIVEADPEVLGDKRVQSAVEGRFCDSAISVREAALELVGRHIASHPDVGFKYFEKIAERIKDTGVSVRKRAIKLIRDMCSSNVNFSGYTRACTEIISRISDDESSIQDLVCKTFHEFWFEEPYGSQTQVFGDGSTVPLEVAKKTEQIVEMLRRMPNNQLLVTVIKRNLSLDFLPQAAKAVGVNPVSLATVRKRCELMCKCLLEKILQVEEINSNEVEVHALPYVLALHAFCLVDPTLCAPASNPSQFVVTLQPYLKTQVDNRMVAQLVESIIFVIDAVLPLLRKLPPNIVDELEQDLKHMIVRHSFLTVVHACIKCLCSVSNIGSKGAAVVEHLIQVFYKCLDNKQQVGRSLFCLGSLIRYGNSLLVSSSNKVIDVRRSLTLCIKFLSEEDFVVKARSLQALGFILIARPEYMLEKDIGKILEGTLSSNADTRLKIQALQNMLEYLLDAESKMGTDKPDDNITGYTVGAVQSVPVAAGAGDTNICGGIIQLYWDNILGRCLDSNEQVRQSALKIVEVVLRQGLVHPITCVPYLIALETDPLESNAKLAHHLLMNMNEKYPAFFESRLGDGLQMSFIFMQSISTASENGNQKIPSKIPVSGKGKTESVSLAQARLGVSRIYKLIRGNRNSRNKFMSSIVRKFDNPKWSHSVIAFLSYCTEVLGLLPFISPDEPLYLIYAINRIVQIRAGPLEANFKAWSSRLSRNENQSTPNGNGMYQQETDKSTIITQGTSMDLNGTFQQNLDAHPDLNDMRSVDLNGTFYQQPDDTLSNNGSSEPKLHAVGSDYFAFSKDDLERVQADCLSAIALQFLLKLKRHLKIMYSLNDARCQAYSPTEQPKPGEVISRQNIPFNISETQFSVPSNPQELIQRYQEFKYALREDTVDYSLYTANIKRKRPTPRKVRRSGPMASGDLEDDDDDDDWGGGMRKITSSGGRRANLRSSSRQY	1786

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip10g03075	1786	Pfam	HEAT repeat associated with sister chromatid cohesion	839	880	IPR026003	-
	Aip10g03075	1786	SUPERFAMILY	ARM repeat	814	1520	IPR016024	-
	Aip10g03075	1786	MobiDBLite	consensus disorder prediction	1738	1786	-	-
	Aip10g03075	1786	MobiDBLite	consensus disorder prediction	127	155	-	-
	Aip10g03075	1786	Gene3D	-	780	936	IPR011989	-
	Aip10g03075	1786	ProSiteProfiles	Zinc finger PHD-type profile.	645	694	IPR019787	-
	Aip10g03075	1786	PANTHER	EXPRESSED PROTEIN-RELATED	64	1773	-	-
	Aip10g03075	1786	MobiDBLite	consensus disorder prediction	116	155	-	-
	Aip10g03075	1786	ProSitePatterns	Zinc finger PHD-type signature.	648	691	IPR019786	-
	Aip10g03075	1786	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	631	699	IPR013083	-
	Aip10g03075	1786	MobiDBLite	consensus disorder prediction	1	45	-	-
	Aip10g03075	1786	MobiDBLite	consensus disorder prediction	28	43	-	-
	Aip10g03075	1786	SMART	PHD_3	647	692	IPR001965	-
	Aip10g03075	1786	Pfam	Sister chromatid cohesion C-terminus	1327	1524	IPR024986	-
	Aip10g03075	1786	PANTHER	NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED	64	1773	IPR033031	GO:0003682\|GO:0010468\|GO:0061780
	Aip10g03075	1786	Gene3D	-	977	1398	IPR011989	-
	Aip10g03075	1786	SUPERFAMILY	FYVE/PHD zinc finger	626	692	IPR011011	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g03075	Aip-Chr10	127840021	127854491	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g03075	646	691	PHD Transcription Factor Family	AT5G12400	46.809	7.28e-07	52.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g03075	K06672		-	gmx:100792021	2701.78