Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03054 ATGGCTGCCGCAAAACCTCAGAGGACTCCACAGGAAGTGGAGGACATAATCATCCGCAAAATCTTTCTCGTGTCGATCACCGATTCCGCCGCGACTAACGCCGATTCCAGAAACGTCTATTTGGAGCTCACAGCGGCGGAGATTCTTAGCGAAGGCAAGGACCTCCGCCTCTCGCGCGATTTGATGGAGCGAGTCCTCATTGATCGACTATCCGGCGACTTTCCCGGCGTCGGAGAATCCCCGTTCCAGTACCTCACCGGTTGCTACCACCGCGCGCATGAGGAGGCAAAGAAAATCGCCAACATGAAGGACAAAACCCTCAGGTCGGAGATGGAGGCGGTGGTGAAACAGGCCAAGAAACTGTGCGTCTCATACTGCAGGATTCACCTCGGCAATCCGGAGCTGTTTCAGAACCGGAATCAAAGTTCCGGTTCGGGAACCGCGTCGCCTCTGCTGCCACTGATATTCGCGGAGGTTGGCGGTGGCATCGACGCGTTCGGAGGTAGCAGTGGTGGCGGAGGGCCAAAGAGTCCACCGGGGTTTCTTGAGGAGTTCTTTAGGGACTCGGATTTTGACAGCCTGGACCCAATCTTGAAAGGACTGTATGAGGAGCTGAGAGGAAGTGTGATGAAGGTTTCTGCTCTTGGGAACTTTCAGGACTCTTTGAGGGCTTTGTTGTTCTTGGTGAGATTCCCTGTTGGTGCAAAGTCACTTGTGAGCCACGAGTGGTGGATTCCCAAAGGGGTTTATATGAATGGCCGTGCCATTGAGATGACCAGCATTTTGGGTCCCTTCTTTCACATTAGTGCTCTTCCTGATCAAACCTTTTTCAGGAGCCAGCCTGACGTTGGACAACAGTGCTTTTCTGATGCATCAACTCGACGACCAGCAGATTTATTATCTTCATTCTCGACTATCAAAACTGTCATGAATAATTTGTATGATGGCCTGTATGAAGTTCTCTTCATTCTCCTTAAGAGTAAAGATACTCGTGATAGTGTACTTGAGTATCTCGCCGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATAACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCATCTTTGTGAGCCATTTTTGGATGCAAATTTAACCAAAAGGAATAAAATTGATCCAAAATATGTACACTACTCCAACCGTTTGAAGCTAAGTGGGTTGACTGCTCTACATGCATCATCGGAAGAAGTTACTGAATGGCTTAATAGCAATAAACGGGCTAATGGAAACAATCAAAATAATGATGGCCAGAAACGCTTGGAGCAATCTCAAGAAGCAAGTAGTTCTGGTAGTAATGCTGGTGAGCTTTCAAATGAAATTTCTGGACATGGTGAAAAGACGGAATATCATTTCATTTGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGCCTTTTAAAAGCATTTTCTGATTTCAAACACTTAGTTCAGGATATTTCTAGATGTGAAGATGCTCTTTCAACACTAAAAGCCATGCAAGAGCAATCTCCCACCCCCCAATTGCAATTGGATATAACTAGACTTGAGAAAGAATTGGAATCGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATATTGCGGGATAACACGCTTATTCAGAATGCACTATCCTTCTACCGTTTGATGATTGTTTGGTTGGTTAGCTTGGTTGGTGGATTTAAGATGCCTCTACCATCGACTTGCCCAATGGAATTTGCCACTATGCCTGAGCATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCCAAGGCCTTGGATGGAGTTGTGCTGGATGAGTTTATGAACTTCATAATTATGTTTATGGCTAGCCCTGAATTCATCAAAAACCCATATTTAAGAGCAAAGATGGTCGAAGTCTTGAACTGTTGGATGCCCCGTAGGAGCGGTTCATCTGCCACAGCTACTTTATTTGAAGGCCACCAACTGTCTCTGGAGTATCTTGTGAGGAATCTTCTAAAACTCTATGTTGACATTGAGTTCACCGGGTCTCACACGCAGTTCTATGACAAATTTAATATCCGCCATAATATAGCCGAACTCCTTGAATACCTGTGGCAGGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAGGAAGAGGAAAAGGGTGTTTATCTGAATTTCTTAAACTTCCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTCAACAAAATTCTTGAGCTAAAAGAGTTGGAGGCTGAAATGTCAAATACAGCTGAGTGGGAACGACGGCCACTTCAAGAGAGGCAGGAGAGGACACGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTGAGTATGCTTGCATTTACATCAGAGCAGATTACTGCTCCATTCCTACTTCCAGAGATGGTATTCTCTCTTTTCCACCTTTTTCTAAAATCCCTTAGTCTGAAAGATCCTGAGAAATATGAATTTCGGCCAAAGCATTTGCTTAAACAGATTGTGCACGTATATGTTCACCTGGCAAGAGGTGATTCAAATTCCATCTTCCCAGCTGCCATCTCCAAGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCAGCAGAGGTTCTTCATATAATAGGTGAGGATGGGAGAATCATACAAGAATTCATTCAACTCGGTGCTAAGGCAAAAGTTGCAGCTTCTGAAGCCATGGATACTGAAGCTACCTTGGGAGAAATTCCAGATGAATTCCTTGATCCAATTCAATACACTTTAATGAAGGATCCTGTCATCTTACCTTCTTCAAGAATCGTAGTTGATCGACCTGTCATACAGAGGCACCTTCTTAGTGATAGCTCCGACCCATTCAACCGATCCCATCTTACCGCCGACATGTTGATTCCTGATACTGAACTCAAAGCAAGAATAGAGGAGTTTGTCAAGTCCCAGGAAATGAAGAAACGTAGTGAAGGTATAAGCATACAGAGCACCAAGGACACGATTCAGACAACAAATGGGGAAATGTTGATCGACTAG 3084 0.4413 MAAAKPQRTPQEVEDIIIRKIFLVSITDSAATNADSRNVYLELTAAEILSEGKDLRLSRDLMERVLIDRLSGDFPGVGESPFQYLTGCYHRAHEEAKKIANMKDKTLRSEMEAVVKQAKKLCVSYCRIHLGNPELFQNRNQSSGSGTASPLLPLIFAEVGGGIDAFGGSSGGGGPKSPPGFLEEFFRDSDFDSLDPILKGLYEELRGSVMKVSALGNFQDSLRALLFLVRFPVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTFFRSQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLYEVLFILLKSKDTRDSVLEYLAEVININASRAHIQVDPITCASSGMFVNLSAVMLHLCEPFLDANLTKRNKIDPKYVHYSNRLKLSGLTALHASSEEVTEWLNSNKRANGNNQNNDGQKRLEQSQEASSSGSNAGELSNEISGHGEKTEYHFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQEQSPTPQLQLDITRLEKELESYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVSLVGGFKMPLPSTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPLQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVFSLFHLFLKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDSNSIFPAAISKDGRSYNDQLFSAAAEVLHIIGEDGRIIQEFIQLGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRIVVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDTELKARIEEFVKSQEMKKRSEGISIQSTKDTIQTTNGEMLID 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03054 1027 ProSiteProfiles U-box domain profile. 928 1002 IPR003613 GO:0004842|GO:0016567
Aip10g03054 1027 SUPERFAMILY RING/U-box 921 1001 - -
Aip10g03054 1027 PANTHER UBIQUITINATION FACTOR E4 1 1004 IPR045132 GO:0000151|GO:0030433|GO:0034450
Aip10g03054 1027 PANTHER - 1 1004 - -
Aip10g03054 1027 CDD RING-Ubox_UBE4A 931 999 - -
Aip10g03054 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 928 1007 IPR013083 -
Aip10g03054 1027 Coils Coil 518 545 - -
Aip10g03054 1027 SMART Ubox_2 932 995 IPR003613 GO:0004842|GO:0016567
Aip10g03054 1027 MobiDBLite consensus disorder prediction 422 456 - -
Aip10g03054 1027 Pfam Ubiquitin elongating factor core 262 912 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Aip10g03054 1027 MobiDBLite consensus disorder prediction 422 458 - -
Aip10g03054 1027 Pfam U-box domain 929 1000 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03054 1 1027 U-box Gene Family AT5G15400 75.167 0.0 1589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03054 K10597 - gmx:100806175 1754.18