Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03049 ATGTCTTTGCTTTTGGAGCTTTATGAGCTTATTTCTGCTAAAGAAGCTGTGATCAATGGTGGTGCTGAAATCAAGGGACTTATAGCTTTGTTTCATCAAGTTTTTTATCAACCAGATCCTAGAGGTGGTCTTAAAGAACTGGTGGATCCTAGGATTGGGGATAATTTAGGCTTGGAGATAATTACTCAATTGATTCAGTTTTCAAGTTCATTAGTTAGCATAGGAGTTTATGGATCCCAACCCTGTAAAGATTGTGCGCGTGATAAGCGACTGGTTGCTTTACTGGAAAAATACCACAAATCTCAGAGGAACCGAGTATTGATCTTTGTTTTGTACAAAATGGAAACCACACGAGTTGAAAGGATGCTTCAACAAGGAGGTTGGAAGGTTGTGTCCATACATGGAGACAAAGCACAACATGATCGTACAAAGGCACTTTCATTATTCAAGAATGGGAGCTGCCCTTTAATGATTGCTACTGATGTGACTGCACGTGGATTGGATATTCCAGATGTTGAAGCTGTTATCAACTATAGTTTTCCTTTAACTACAGAAGATTATGTTCATAGAATTGGTCGGACTAGACGAGCTAATAAAAAGGGTGTTGCCTATACATTCTTCACACAGCAGAATAAGGTGGTATCCATGCCCGATGTATTTGAGGGTCTTACTGGGGAGCTTGTGAATGTATCAAGAGAAGCTGGACAAATTGTGCCAGATGCCCTTTTAAAATTTGGCACACATGTAAAGAAAAAGTTTCACTACCACCGCCACCGCCACTGCCGCCACCCTCAATCGCTTTTGGATGAGGACTATGATGATGATGAGGATGAAGATGACACTGAAGACTATAGCTGA 858 0.4079 MSLLLELYELISAKEAVINGGAEIKGLIALFHQVFYQPDPRGGLKELVDPRIGDNLGLEIITQLIQFSSSLVSIGVYGSQPCKDCARDKRLVALLEKYHKSQRNRVLIFVLYKMETTRVERMLQQGGWKVVSIHGDKAQHDRTKALSLFKNGSCPLMIATDVTARGLDIPDVEAVINYSFPLTTEDYVHRIGRTRRANKKGVAYTFFTQQNKVVSMPDVFEGLTGELVNVSREAGQIVPDALLKFGTHVKKKFHYHRHRHCRHPQSLLDEDYDDDEDEDDTEDYS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03049 285 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 83 264 - -
Aip10g03049 285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 212 IPR027417 -
Aip10g03049 285 CDD SF2_C_DEAD 87 207 - -
Aip10g03049 285 Gene3D - 79 249 IPR027417 -
Aip10g03049 285 PANTHER BNAA08G07020D PROTEIN 83 264 - -
Aip10g03049 285 Pfam Helicase conserved C-terminal domain 89 198 IPR001650 -
Aip10g03049 285 SMART helicmild6 117 198 IPR001650 -
Aip10g03049 285 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 90 246 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03049 Aip-Chr10 127395725 127399395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03049 93 206 Eukaryotic Initiation Factors Gene Family AT3G19760 35.965 1.93e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03049 K14811 - gmx:100806057 281.567