Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03042 ATGGAGATAAACTCATATTTGGGGATGGGTGAACTTCTATACACATTCTTTCGGAGATTCAAAGATGTCATTCCAAGCTCCATGACATTTTGTGATTTTGCTGGTAATGAGGTTGATGTGGTTATCGACAAGTGTCACCGAACAGACAAGTTCTTGGTTGTTGACGTCAAGGACCATTACATGCGCTCTAAAGAGCTGTGTTCCCCACCATTGAAACTCACTGTTGAGGTCAGGCCATCTGTTCCTATTGAGGAAGTAATCAACATATCTGATGACATATGTAATGAAAGTCCCGTCGTTGATCCAGTTGAATTTGTAACAATTCCTGAAATCCTGCATCAACAAGATAATTCTACTCCCTTTAATCCAAATTCGGCTGACACAATTAACGAGCATCATATTCTTCCACAATCTGTTATCGACACATTGACTTGCGTTGATCCCACCGTTTATGCCGGTCTTGAACCTTATTCAGGTAAAGTCATTTTCTCCCCTAACAAGCATGTCCAACAGGAACAATGTGATCCAATACCACAGTTACTATCTTTTTCTGGTGTTCCTTCCTCGCCCAGTCTAACATTTCCACCAACTGGTACCATATCTGCCCCGCTAGAGCAGACTATTCACCATTCAAACACTAGTCCTGATGTTGTTACCAATCATAATATAGTGTCTCCCAATAGCCGTAGCCCCACACCACCACCACCTCATAATAGCCACGTCGTCCTGCCATCGCACTTTCCTCTACGACTAGAGTATTATTCTGTGGTTAGGATGATATCCAAGTATCAGTCAACTCACTACTCTATGCTTCTTCCTTCTGCTTTTTCGTCGCAAGCATTTCCTTCGAGACTCGATTTTGTTCGTGTTAGGGAGCTCCGCAACCCACCTATAGTAATGAAGCTTCGCTGGCGGAGTCTGAGGTCATCAGAAGCCTTCCTTACAAGGGGATGGAGAAGATTTTCCATTGACCATGGACTAAAGTGTGGAAGTGTTGTTAGATTTTTAGTGCCCACTAATGATGAAACCACCATCTTTGTCTCTATATTACCCGCCACCGTCGCCGTAGTAATCTCCTCGGTCGACAATACCGTCGCCGCTGGCAATATCACAACTGTAGGGTACCGTGCCAAACCAAAGGTCTCTCCCATTGACGTTCTTCGTCTCGCCGTGAACCACTTGATCGGAGAACTCCTCTTGCCATCACGAGGGGCTCTTGGTCGGTCATCATCTTCTTGCCGTCGCGAACTCTCTGCACAGCGTCACTGTCTTCCAACGCTTTGTACCCCAACACGCTCCTTTCTCTACATTTCTCTCAATTATGTTGTGGAGTATTCACCTCGCCGGTGCCTTACTTTGTCCCTCACTGGGATGGGTGAACTTCTATACACATTCTTTCGGAGATTCAAAGATGTCATTCCAAGCTCCATGACATTTTGTGATTTTGCTGGTAATGAGGTTGATGTGGTTATCGACAAGTGTCACCGAACAGACAAGTTCTTGGTTGTTGACGTCAAGGACCATTACATGCGCTCTAAAGAGCTGTGTTCCCCACCATTGAAACTCACTGTTGAGGTCAGGCCATCTGTTCCTATTGAGGAAGTAATCAACATATCTGATGACATATGTAATGAAAGTCCCGTCGTTGATCCAGTTGAATTTGTAACAATTCCTGAAATCCTGCATCAACAAGATAATTCTACTCCCTTTAATCCAAATTCGGCTGACACAATTAACGAGCATCATATTCTTCCACAATCTGTTGTCGACACATTGACTTGCGTTGATCCCACCGTTTATGCCGGTCTTGAACCTTATTCAGGTAAAGTCATTTTCTCCCCTAACAAGCATGTCCAACAGGAACAATGTGATCCAATACCACAGTTACTATCTTTTTCTGGTGTTCCTTCCTCGCCCAGTCTAACATTTCCACCAACTGGTACCGTATCTGCCCCGCTAGAGCAGACTATTCACCATTCAAACACTAGTCCTGATGTTGTTACCAATCATAATATAGTGTCTCCCAATAGCCGTAGCCCCACACCACCACCACCTCATAATAGCCACGTCGTCCTGCCATCGCACTTTCCTCTACGACTAGAGTATTATTCTGTGGTTAGGATGATATCCAAGTATCAGTCAACTCACTACTCTATGCTTCTTCCTTCTGCTTTTTCGTCGCAAGCATTTCCTTCGAGACTCGATTTTGTTCGTGTTAGGGAACTCCGCAACCCACCTATAGTAATGAAGCTTCGCTGGTGGAGTCTGAAGTCATCAGAAGCCTTCCTTACTAGGGGATGGAGAAGATTTTCCATTGACCATGGACTAAAGTGTGGAAGTGTTGTTAGATTTTTAGTGCCCACTAATGATGAAACCACCATCTTTGTCTCTATATTACCCGCCACCGTCGCCGTAGTAATCTCCTCGGTCGACAATACCGTCGCCGTTGGCAACATCACAGCTGTAGGGTACCGTGCCAAACCAAAGGTCTCTCCCATTGACGTTCTTCATCTCGTCGTGAACCACTTGATCGGAGAACTCCTCTTGCCATCACGAGGGGCTCTTGGTCGGTCATCATCTTCTTGCCGTCGCGAACTCTCTGCACAGCGTCACTGTCTTCCAACGCTTTGTACCCCAACACGCTCCTTTCTCTACATTTCTCTCAATTATGTTGTGGAGTATTCACCTCGCCGGTGCCTTACTTTGTCCCTCACTTTGTTGAATCTGGATGCTGATTATTCTGATTGTCATTTTAATACTCAATTGCTCGCATTCTGGGTCTTTCTTCTGCTAAAACTGGGCGCCACAAGTGGTTATAAATACATCACCAAGACCAGGATCAAGCTGAGGGTATTGAAAATATGGTCACTGTCCCCTGCCCAGCAGAAATACGTAAGACTAACTTTGGAGTTTGTGGCAATGGACCAGCTGGGAGATCGCATCCAATGTTCCATTAGGAATCCACAGCGGAGGCTGTTTGAGGATGAGTTGGTGGAGGGAAAAATATATACCATCTGCAACTTTTCAGTTGCCATTAATGATAAAAAATACAAGGCCACTAATCATGCTAGCAGGATTTACTTTAAGAGGGATACTCAACTTCGACTGGTTGATGATCCATCCTTTTCTGAGAATGTCTTCCGATTTGTTCCCAACGAAGTCATACTCAACCACACCAACGCTCAGTCGCATCTTATAGATGTCATTGGTCTTCTGACAGCCAAGGGTGACATAATTGAATTTACTAAAAATGGAAAGAAGAGCAACTACATCGTTCTGGAGCTTGACGACATGGGAAAAGGAAAAATTCGCTGTACACTTTGGGAGGAGTTCGCAAGTAAGTTGGTCAAACATATTCAAGAGCAGCTGACGTCTGAGTATATCCTAATTGTACAATTCGCTAAGTTCAATCTATTTAAAGGTACAATGGGGATATCAAACATCACCTATAATTCAAATCTTTACATCAATGCGGACTTTCAGGCGGTAAAGGATTTTCGTAAAAGTGTCATCATGTCCGGTGTTCCACCTCTAAATCAACTCTCCCAAATAACGACTGAACCTGTATACTCCATTGAGGAAGATCTCATTGACAAGTCAATATATAAATCCATTTCTGAGCTCAAGGAATGCATTGAGAATGGGAGCTTTGTTACAATTGGAACTGTTGTTGCAATCGATCCTAAGAACGGTTGGTGGTACAAAAGTTGCAAACATTGTTTCCATTCTCTGAAGGAGGCTGAGAACTCATACCACTGCGCTAAATGCGACACGTATCCCACCATTCACACTCCACGGTATAGCATTAATATTAAGGTTGTTGATGACACTGATTCGGCTGCATTTCTGCTGTATGACAAAGAAGCTTCCAAATTTCTTGGGATCTCAGCTTTTGATCTCAGACTTGCACAACTGACCAGGGGTGGCACCAATGAGGAATACCCGATAGAGCTTAATTCTTTTAGGGGGAAAAATTATCTTCAAAGTCTCCGTGAAGATGGAGGATCTTAA 4011 0.44 MEINSYLGMGELLYTFFRRFKDVIPSSMTFCDFAGNEVDVVIDKCHRTDKFLVVDVKDHYMRSKELCSPPLKLTVEVRPSVPIEEVINISDDICNESPVVDPVEFVTIPEILHQQDNSTPFNPNSADTINEHHILPQSVIDTLTCVDPTVYAGLEPYSGKVIFSPNKHVQQEQCDPIPQLLSFSGVPSSPSLTFPPTGTISAPLEQTIHHSNTSPDVVTNHNIVSPNSRSPTPPPPHNSHVVLPSHFPLRLEYYSVVRMISKYQSTHYSMLLPSAFSSQAFPSRLDFVRVRELRNPPIVMKLRWRSLRSSEAFLTRGWRRFSIDHGLKCGSVVRFLVPTNDETTIFVSILPATVAVVISSVDNTVAAGNITTVGYRAKPKVSPIDVLRLAVNHLIGELLLPSRGALGRSSSSCRRELSAQRHCLPTLCTPTRSFLYISLNYVVEYSPRRCLTLSLTGMGELLYTFFRRFKDVIPSSMTFCDFAGNEVDVVIDKCHRTDKFLVVDVKDHYMRSKELCSPPLKLTVEVRPSVPIEEVINISDDICNESPVVDPVEFVTIPEILHQQDNSTPFNPNSADTINEHHILPQSVVDTLTCVDPTVYAGLEPYSGKVIFSPNKHVQQEQCDPIPQLLSFSGVPSSPSLTFPPTGTVSAPLEQTIHHSNTSPDVVTNHNIVSPNSRSPTPPPPHNSHVVLPSHFPLRLEYYSVVRMISKYQSTHYSMLLPSAFSSQAFPSRLDFVRVRELRNPPIVMKLRWWSLKSSEAFLTRGWRRFSIDHGLKCGSVVRFLVPTNDETTIFVSILPATVAVVISSVDNTVAVGNITAVGYRAKPKVSPIDVLHLVVNHLIGELLLPSRGALGRSSSSCRRELSAQRHCLPTLCTPTRSFLYISLNYVVEYSPRRCLTLSLTLLNLDADYSDCHFNTQLLAFWVFLLLKLGATSGYKYITKTRIKLRVLKIWSLSPAQQKYVRLTLEFVAMDQLGDRIQCSIRNPQRRLFEDELVEGKIYTICNFSVAINDKKYKATNHASRIYFKRDTQLRLVDDPSFSENVFRFVPNEVILNHTNAQSHLIDVIGLLTAKGDIIEFTKNGKKSNYIVLELDDMGKGKIRCTLWEEFASKLVKHIQEQLTSEYILIVQFAKFNLFKGTMGISNITYNSNLYINADFQAVKDFRKSVIMSGVPPLNQLSQITTEPVYSIEEDLIDKSIYKSISELKECIENGSFVTIGTVVAIDPKNGWWYKSCKHCFHSLKEAENSYHCAKCDTYPTIHTPRYSINIKVVDDTDSAAFLLYDKEASKFLGISAFDLRLAQLTRGGTNEEYPIELNSFRGKNYLQSLREDGGS 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03042 1336 Gene3D - 1042 1174 IPR012340 -
Aip10g03042 1336 Gene3D - 1197 1332 IPR012340 -
Aip10g03042 1336 SUPERFAMILY Nucleic acid-binding proteins 1204 1327 IPR012340 -
Aip10g03042 1336 Pfam Replication factor-A C terminal domain 1218 1304 IPR013955 -
Aip10g03042 1336 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 940 1292 - -
Aip10g03042 1336 Pfam Domain of unknown function DUF223 972 1061 IPR003871 -
Aip10g03042 1336 CDD B3_DNA 705 784 IPR003340 GO:0003677
Aip10g03042 1336 CDD RPA1_DBD_C 1205 1300 IPR013955 -
Aip10g03042 1336 SUPERFAMILY Nucleic acid-binding proteins 941 1042 IPR012340 -
Aip10g03042 1336 CDD RPA1_DBD_A_like 946 1032 - -
Aip10g03042 1336 PANTHER REPLICATION FACTOR A 1, RFA1 940 1292 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g03042 1336 SUPERFAMILY DNA-binding pseudobarrel domain 258 346 IPR015300 -
Aip10g03042 1336 Gene3D - 939 1039 IPR012340 -
Aip10g03042 1336 SUPERFAMILY DNA-binding pseudobarrel domain 705 798 IPR015300 -
Aip10g03042 1336 CDD RPA1_DBD_B_like 1067 1171 - -
Aip10g03042 1336 ProSiteProfiles B3 DNA-binding domain profile. 255 353 IPR003340 GO:0003677
Aip10g03042 1336 ProSiteProfiles B3 DNA-binding domain profile. 704 802 IPR003340 GO:0003677
Aip10g03042 1336 SUPERFAMILY Nucleic acid-binding proteins 1062 1170 IPR012340 -
Aip10g03042 1336 Gene3D - 694 802 IPR015300 -
Aip10g03042 1336 Gene3D - 245 353 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03042 Aip-Chr10 127315535 127325334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03042 975 1312 Core DNA Replication Machinery Family AT5G08020 24.217 2.97e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03042 - - ahf:112707100 644.425