Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03031 ATGGGTTGCATCAATTCCAAGAATGCTGTGTCTGGGGACTCATCACCTTATTTATCACCTGTTGATCATGTGATTTTGGAACCTCTTCCTCCACCAGCAGTTTCAGTTGCAGGATCAAGGGGCCATTCTCATGTGGCAGGATCATCATTAGCAGATGAGAACAAGAAGAAATTGAAAAAGAACGCCTCCAAGAAGAGCAATGGCTCCTTTAGCATCAGGCTTGGATTCTCCAAGAGGCATGTTGATGCTGAACACAATGCTGCTGGTTGGCCAAGTTGGCTCACAGTTACTGCTGGTGAAGCTGTTCATGGATGGCTCCCTCTTAGAGCTGATTCTTTTCAAAAGTTAGATAAGATTGGACAAGGTACTTATAGCAGCGTGTTCAGAGCACGTGAAGTTGAAACAGGAAGGATGTTTGCTCTGAAGAAGGTGCGCTTTGACAATTTACAACCTGAGAGCATTAGATTCATGGCAAGAGAAATATCAATCCTTCGCAGGCTAGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTAAGCAATCTAGTAGCATATACCTTGTTTTTGAATACATGGAGCATGATCTTGCTGGCTTAGTATCGCGTCCTGATATTCTCTTCACTGACTCTCAGATAAAGTGTTACCTGCGACAGCTATTAAGTGGAATTGAGCACTGTCATATCCGTGGTATCATGCATCGTGACATTAAAGTATCAAATATCTTATTGAACAATGAAGGTATTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGTCCAAATAACAAGCATCAGTTAACCAGTCGTGTAGTAACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAATTATGGAGTATCGGTTGATTTGTGGAGTGTTGGTTGTGTATTTGCCGAACTTTTTCTAGGAAAACCAATCCTTAAGGGAAGAACTGAGGTTGAACAACTACACAAAATTTTTAAGCTGTGTGGATCTCCGCCGGACGATTTCTGGAAAAAGTATAAGCTTCCTCATGCAACAGTATTTAAACCTCAAACTACTTACGAAAGCTCTTTGCGTGAGAGGTGTGCCGAGTTTCCAGAAACTGCTGTTGATCTACTTGAGACTTTATTATCCATTGACCCCGCCAATCGTGGAACCGCCTCCTCTGCCCTGATGTCTGAGTATTTCAACACCAAACCTTATGCTTGCAATCCATCAAACTTGCCAAAGTATTCGCCTAGCAAAGAACTGGATGCTAAAAGTCGGGAAGACATGTCGAGGAAAAGGACCGATGATAAAATGCAAATGCGAGATGCTGCAACATCGAGAAGGCAACCAAGACGAGTCAAGAAATATTTGCGAGAACCAATTGATCATACTCAATCAGTTTCCAAAGAGAATGGTCCTCATAATGTTCGTAGAAGTGATGGTAGATCACATATTCAAAAGGGCATAGGAGGACACAAAGACCATCTACACCCCGAAATGGATGCAGTCTCAGACCTTTCGCAGATGGTGAATATTGCAGATGGTAATGGCTTTACTGTACCGGCACAAGGCGGCTATGACTGGGTGAAAAGGAGAAAGCAAGATGCTTCATCTACACTATCAGATGGCTCAAGAAGCAAAATTAGTGCATTGGATCCAAACTTTGCTAAAGGAACTTATGATTTAAACAGACAAAGGATGACTGCTTTGGACAAGAGATATAATGACAAGCAAGGTTACCATGAAGAGACTCGCGTAACGATGGATTTTGATCCTTCCGAACTATTGAATCATCAGGGAAATACAGATCATGGTTCGCAAGTGAGTGACATGCGGCGCGAAGTTCGAAAATCAAGGTTTGGAAGAGAGATATGA 1866 0.4234 MGCINSKNAVSGDSSPYLSPVDHVILEPLPPPAVSVAGSRGHSHVAGSSLADENKKKLKKNASKKSNGSFSIRLGFSKRHVDAEHNAAGWPSWLTVTAGEAVHGWLPLRADSFQKLDKIGQGTYSSVFRAREVETGRMFALKKVRFDNLQPESIRFMAREISILRRLDHPNIMKLEGIITSKQSSSIYLVFEYMEHDLAGLVSRPDILFTDSQIKCYLRQLLSGIEHCHIRGIMHRDIKVSNILLNNEGILKIGDFGLANTISPNNKHQLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPDDFWKKYKLPHATVFKPQTTYESSLRERCAEFPETAVDLLETLLSIDPANRGTASSALMSEYFNTKPYACNPSNLPKYSPSKELDAKSREDMSRKRTDDKMQMRDAATSRRQPRRVKKYLREPIDHTQSVSKENGPHNVRRSDGRSHIQKGIGGHKDHLHPEMDAVSDLSQMVNIADGNGFTVPAQGGYDWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLNRQRMTALDKRYNDKQGYHEETRVTMDFDPSELLNHQGNTDHGSQVSDMRREVRKSRFGREI 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03031 621 Gene3D Transferase(Phosphotransferase) domain 1 196 437 - -
Aip10g03031 621 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Aip10g03031 621 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g03031 621 MobiDBLite consensus disorder prediction 407 479 - -
Aip10g03031 621 MobiDBLite consensus disorder prediction 590 621 - -
Aip10g03031 621 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
Aip10g03031 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Aip10g03031 621 MobiDBLite consensus disorder prediction 604 621 - -
Aip10g03031 621 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g03031 621 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g03031 621 MobiDBLite consensus disorder prediction 35 66 - -
Aip10g03031 621 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Aip10g03031 621 PANTHER CELL DIVISION PROTEIN KINASE 1 565 - -
Aip10g03031 621 PANTHER CYCLIN-DEPENDENT KINASE 1 565 - -
Aip10g03031 621 MobiDBLite consensus disorder prediction 416 462 - -
Aip10g03031 621 CDD STKc_CDK9_like 113 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03031 Aip-Chr10 127130084 127135637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03031 105 447 Core Cell Cycle Gene Families AT5G10270 45.856 1.30e-108 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aip10g03031 Pkinase 5.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03031 - - gmx:100790917 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02156 01 114939325 114943324 Aip10g03031 10 127130084 127135637 ECH
Aip10g03031 10 127130084 127135637 Aip10g03031 10 127130084 127135637 ECH