Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03028 ATGGCAAGGAAGAGAAAGAGCATTGAAGTAGTGGAAGAGGGGAACATAATTGAGGGAAGTTTGGGATGGGAGGAGATGGTGAAGCAAGCTGCAGTGCTTGGTGGAGCGAGGAGGGCGAGGAAGCGCTACGTTGGCGTCCGGCAGAGGCCGTCTGGAAGATGGGTGGCCGAGATTAAAGACACAATTCAGAAGATAAGAGTCTGGCTCGGAACCTTCGACACTGCAGAAGAAGCTGCCAGAGCTTATGACGAGGCGGCGTGCCTTCTTCGTGGCGCCAACACAAGAACAAACTTCTGGCCTTGTTCTCAATCCTCCACAAGCCCTGCTCTGTCTTCAAAGATCACAAATCTGCTCCTTCAAAGGCTTAAGGAAAGGAACAACACTTGTTCTGCTTCGAATTCTGTTCTTATCAATCAAGAAATTCAACAAGTGGAGGCATGCGGAGGGACTAATTCACCAGAATTCTCAATTGATCAATTCAATGACCTCCTCAATGAGGAAGATTACGGCGCAAGCAACACCGAATTCGTCGACAACGCTGCACGGATTGATTACATCACAAGCAGCTTTGAGTCTTGCTTGGCCGACAACAACAACAGCACGGATTACAAGCCGGCGAGCGACGACGACAGCGAAGGAGAAAGCTCGGATTTCGGCCTCCAAAGCTATGCAGATTTCGCGTTTCTTGACAACATCTCTGCGCCGCCGAGCAGCTATTACTCGCCGTTCGAGATGGCGCAGGAGATGGATGAAGCAGTGGAAGCAGAGAACTACGGCATACCTGAGTGCTTGAAGAGAATGAAGTATGAGAGAAAGTTCTCAGCTTCACTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGGGAACATAAAGGGTAGAACCGGAATTTCCATGGCTGACCAATTGACAAGCCTTCAAATGGCTTGTAACAAAAACAAACAAGAGAAGAAGATTGATGATGACAAAGAAGAAGAAAATATTGATCAACCAATGCCAATTGACATGAATTCCTCTTCTTCTTCTTCGTCGTCGTCGTCAAGTATTGTTGATGCAGAACTCTTGTTTTGGAGCTCACTAGATCTTTCACCTATTTACACAAAATCTTTCCCCTATTTGAATTGTTAA 1143 0.4646 MARKRKSIEVVEEGNIIEGSLGWEEMVKQAAVLGGARRARKRYVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNTCSASNSVLINQEIQQVEACGGTNSPEFSIDQFNDLLNEEDYGASNTEFVDNAARIDYITSSFESCLADNNNSTDYKPASDDDSEGESSDFGLQSYADFAFLDNISAPPSSYYSPFEMAQEMDEAVEAENYGIPECLKRMKYERKFSASLYAFNGIPECLKLKLESGNIKGRTGISMADQLTSLQMACNKNKQEKKIDDDKEEENIDQPMPIDMNSSSSSSSSSSSIVDAELLFWSSLDLSPIYTKSFPYLNC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03028 380 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 312 - -
Aip10g03028 380 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Aip10g03028 380 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Aip10g03028 380 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Aip10g03028 380 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Aip10g03028 380 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 312 - -
Aip10g03028 380 MobiDBLite consensus disorder prediction 318 351 - -
Aip10g03028 380 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Aip10g03028 380 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Aip10g03028 380 MobiDBLite consensus disorder prediction 337 351 - -
Aip10g03028 380 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Aip10g03028 380 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03028 Aip-Chr10 127107722 127108864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03028 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 1.93e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip10g03028 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03028 K09286 - gmx:100786711 426.402