Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03008 ATGGGACGCTCACCATGCTGCGACAAAGTTGGCTTAAAGAAAGGTCCATGGACTCCTGAAGAGGATCAGAAACTCTTAGCTTACATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTACCATCTAAAGCTGGGCTTCAGAGATGTGGTAAGAGCTGCAGGCTTAGATGGACTAATTATCTTAGACCTGATATTAAAAGGGGAAAGTTTAGTTTGCAAGAAGAACAAACCATCATTCAACTTCATGCCCTATTAGGGAACAGGTGGTCAGCAATAGCAACACATTTGCCAAATAGAACAGATAATGAAATCAAGAATTACTGGAACACGCATCTAAAGAAGAGACTAACAAAGATGGGAATTGATCCCGTCACTCACAAACCCAAGAACGACACTCTCCTCTCTAGCGACGGTCAATCCAAGACCGCCGCTAATCTCTCCCACATGGCCCAATGGGAGAGCGCTCGCCTTGAAGCCGAGGCGAGACTAGTCAGAGAATCGAAACTAAGATCACACCTCACAACTTCTTCGTCATCAAACAACAAACCATCATCAGAAGTAGTATCAGCAGCACTCCCACCAACTATACCCTCTTCTCGTTCTTCTTCTTCTTCCATTGATGTCTTGAAAGCTTGGACCAATGGAGGATGGTTGAAATCTAATGAAGGAAACAACAACAACAACAATGGTGGTGGTGGAATTGGAGACCTTGAGTCACCTACTTCTACTTTGTCTTTCTCTGAGAACAATGCTCCACCGCCATTAACAATCATGGCTGGTGGTGGCGGAGGAATAATTGAAGGGCATAATGGTAATAACGTGAAAGAAGAGGGTAAAGTGTATGATAGTCTTCATGAGTTAACAATGTCCGCCATGGAAGGAACGTCATGGGGTTCTTCGCATCAACATCACGATGTTATTGTTGGGGATGGTCACGTGGACGATGATGATGATGATCCCATGGTTGGTGAAGAAGGGTTCACGAATCTTCTTCTCAATGCAGCAGCACAATCTGATGATCGGAGTTTGTCTGAAGAAGGTGGTGGAGACGGAGCTAGTGGTGGTAGCGGCGACGGCGACGGCGACGGCAATGGTAGTGATTTCTATGAGGATAACAAGAACTACTGGAACAGCATTCTTAACTTAGTAAACTCTTCTCCTTCTGATTCCCCAATGTTCTAA 1182 0.4509 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPNRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDTLLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHLTTSSSSNNKPSSEVVSAALPPTIPSSRSSSSSIDVLKAWTNGGWLKSNEGNNNNNNGGGGIGDLESPTSTLSFSENNAPPPLTIMAGGGGGIIEGHNGNNVKEEGKVYDSLHELTMSAMEGTSWGSSHQHHDVIVGDGHVDDDDDDPMVGEEGFTNLLLNAAAQSDDRSLSEEGGGDGASGGSGDGDGDGNGSDFYEDNKNYWNSILNLVNSSPSDSPMF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03008 393 MobiDBLite consensus disorder prediction 337 370 - -
Aip10g03008 393 CDD SANT 69 112 IPR001005 -
Aip10g03008 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip10g03008 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip10g03008 393 CDD SANT 16 61 IPR001005 -
Aip10g03008 393 Gene3D - 69 116 - -
Aip10g03008 393 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip10g03008 393 MobiDBLite consensus disorder prediction 122 147 - -
Aip10g03008 393 MobiDBLite consensus disorder prediction 170 205 - -
Aip10g03008 393 MobiDBLite consensus disorder prediction 217 252 - -
Aip10g03008 393 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip10g03008 393 MobiDBLite consensus disorder prediction 295 324 - -
Aip10g03008 393 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip10g03008 393 Gene3D - 13 66 - -
Aip10g03008 393 SMART sant 13 63 IPR001005 -
Aip10g03008 393 SMART sant 66 114 IPR001005 -
Aip10g03008 393 PANTHER TRANSCRIPTION FACTOR MYB106 1 386 - -
Aip10g03008 393 MobiDBLite consensus disorder prediction 129 147 - -
Aip10g03008 393 MobiDBLite consensus disorder prediction 168 205 - -
Aip10g03008 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 386 - -
Aip10g03008 393 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip10g03008 393 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip10g03008 393 MobiDBLite consensus disorder prediction 217 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03008 Aip-Chr10 126591645 126596421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03008 1 393 MYB Transcription Factor Family AT3G01140 56.468 2.31e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip10g03008 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03008 K09422 - gmx:100787446 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04298 03 127446460 127448364 Aip10g03008 10 126591645 126596421 ECH
Aip10g03008 10 126591645 126596421 Aip10g03008 10 126591645 126596421 ECH