Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03006 ATGAATACAAAGATTGAACTGCCACCAGGTTTCAGGTTTCATCCAACAGATGAAGAGCTCATAACTCACTACCTCTCTCAGAAGGTTGTTGGTAGCTGCTTCTATGCAACTGCCATTATTGGAGAGGCTGATTTCAACAAGTGTGAGCCTTGGGATTTACCTTGGAGGGGCAAAATGGGAGAAAAAGAATTGTATTTTTTCTGTTTGAAGGACAAAAAATACCCAACAGGTGAAAGGACAAATAGAGCCACTGGCGCTGGGTACTGGAAGGCCACAGGGAAAGACAGAGAGATATACAATGCAAAAGCAAAAGCACTTATTGGGATGAAGAAAACACTTGTTTTCTACAAAGGAAGAGCTCCAAATGGTGAAAAGACAAATTGGGTCATGCATGAATATAGGTTGGAAGGCGATAATAAACCTTCTATATACAATCTACCCAAAGAAACCAAGAAAGAGTGGGCTTTGTGCAGAGTTCTACACAAAAGTGAAAAGAAAGTAATGCATGTTCCACAACCACAGGGATTGGTTGAGTTCAGCTCCTATGAAAATAAGGAACTTCCCCAATTAATGGATTCTTCACAAGTAACATTCTTTTCATCAGACCCAAATAATCAAAGTGAGGATCCAAATCCAATCACACGTGATGATGATAATAATAATGATGACATCATATTTGATAGCATTGAAACTCCTTTCTTGGAACAACAACCACCTTATTCTTCATCCTATGATTCTTCAGATTTAGACACCCTTAACCCTGCCACATGGGATATTTCCGAAAATGCCCCTACAAGTAATGCGTCTAAGGAGACGGACTTTGATGCTGACATGTTCTCTTTGATGTACAACAATAGAGAAGTGTTCCAAACATCATTTGAGAATCAGGAATATTATGCATATGATTCTGTAGGACATGTGGACAATGGTTCCCTATGGAATTTTTAG 948 0.3914 MNTKIELPPGFRFHPTDEELITHYLSQKVVGSCFYATAIIGEADFNKCEPWDLPWRGKMGEKELYFFCLKDKKYPTGERTNRATGAGYWKATGKDREIYNAKAKALIGMKKTLVFYKGRAPNGEKTNWVMHEYRLEGDNKPSIYNLPKETKKEWALCRVLHKSEKKVMHVPQPQGLVEFSSYENKELPQLMDSSQVTFFSSDPNNQSEDPNPITRDDDNNNDDIIFDSIETPFLEQQPPYSSSYDSSDLDTLNPATWDISENAPTSNASKETDFDADMFSLMYNNREVFQTSFENQEYYAYDSVGHVDNGSLWNF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03006 315 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Aip10g03006 315 SUPERFAMILY NAC domain 5 162 IPR036093 GO:0003677|GO:0006355
Aip10g03006 315 ProSiteProfiles NAC domain profile. 7 162 IPR003441 GO:0003677|GO:0006355
Aip10g03006 315 MobiDBLite consensus disorder prediction 196 210 - -
Aip10g03006 315 Gene3D NAC domain 16 168 IPR036093 GO:0003677|GO:0006355
Aip10g03006 315 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 207 - -
Aip10g03006 315 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 3 207 - -
Aip10g03006 315 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03006 Aip-Chr10 126563868 126566360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g03006 5 205 NAC Transcription Factor Family AT5G39610 63.184 2.34e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip10g03006 NAM 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g03006 - - ahf:112784292 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02118 01 114172542 114174001 Aip10g03006 10 126563868 126566360 ECH
Aip10g03006 10 126563868 126566360 Aip10g03006 10 126563868 126566360 ECH