Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02989 ATGGCGGAGAGCTGCTCTGTCGGCGTCGAGCTCCATCACCGTCGTCGGGCTTCTGGTGGGAAATTCATGGCTCTTCTTGGGTTCCTTCTTCTGGTGTTTATCTCCATGCTCTCATATGTTAGTGCCTATGGATATGGTGGTTGGATCAATGCACATGCCACATTCTATGGTGGTAGTGATGCTTCTGGAACAATGGGTGGAGCTTGTGGATATGGAAACCTGTACAGCCAAGGGTATGGGACAAACACAGCAGCACTAAGCACAGCATTGTTCAACAATGGATTAAGCTGTGGAGCATGTTATGAAATAAGGTGTGCAAATGACCCACACTGGTGTTCCCCTGCCTCAATTGTAGTAACCGCCACTAACTTCTGCCCCCCTGGTGGTTGGTGTGACCCTCCAAATCACCATTTTGATCTCTCTCAGCCTGTTTTTCAGCAAATTGCTCAGTATAAAGCTGGCATTGTTCCTGTCATTTACAGAAGGGTGAGGTGCAAGAGAAGAGGGGGAATAAGGTTCACCATAAATGGCCACTCATACTTCAATTTAGTCCTAGTAACAAATGTTGGAGGTGCTGGTGATGTGCATGGTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCTTACTTGAATGGACAAAGCCTTTCATTTTTAGTTACCACAAGTAATGGCCACAGTGTGGTATCTTACAATGTTGCCCCTCCAAGTTGGTCCTTTGGACAGACCTACACTGGAAGACAATTCCCTTAA 792 0.4646 MAESCSVGVELHHRRRASGGKFMALLGFLLLVFISMLSYVSAYGYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIRCANDPHWCSPASIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVIYRRVRCKRRGGIRFTINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSNGHSVVSYNVAPPSWSFGQTYTGRQFP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02989 263 PANTHER EXPANSIN-A15 22 262 IPR002963 GO:0009664
Aip10g02989 263 Pfam Lytic transglycolase 83 160 IPR009009 -
Aip10g02989 263 Gene3D - 170 262 IPR036749 -
Aip10g02989 263 PANTHER EXPANSIN 22 262 - -
Aip10g02989 263 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Aip10g02989 263 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Aip10g02989 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Aip10g02989 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Aip10g02989 263 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Aip10g02989 263 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Aip10g02989 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 170 IPR007112 -
Aip10g02989 263 SUPERFAMILY PHL pollen allergen 167 259 IPR036749 -
Aip10g02989 263 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Aip10g02989 263 SMART dpbb_1 83 160 IPR007112 -
Aip10g02989 263 Gene3D - 34 166 IPR036908 -
Aip10g02989 263 PRINTS Expansin signature 105 116 IPR002963 GO:0009664
Aip10g02989 263 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Aip10g02989 263 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Aip10g02989 263 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Aip10g02989 263 PRINTS Expansin signature 78 92 IPR002963 GO:0009664
Aip10g02989 263 PRINTS Expansin signature 117 127 IPR002963 GO:0009664
Aip10g02989 263 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Aip10g02989 263 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Aip10g02989 263 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Aip10g02989 263 SUPERFAMILY Barwin-like endoglucanases 47 188 IPR036908 -
Aip10g02989 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02989 Aip-Chr10 126171163 126176489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02989 23 262 Expansin Gene Family AT2G03090 77.419 3.11e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02989 K20628 - gmx:100791784 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02117 01 114102934 114105297 Aip10g02989 10 126171163 126176489 ECH
Aip05g01977 05 66469369 66472363 Aip10g02989 10 126171163 126176489 ECH
Aip03g04292 03 127322006 127323649 Aip10g02989 10 126171163 126176489 ECH
Aip10g02989 10 126171163 126176489 Aip10g02989 10 126171163 126176489 ECH