Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02979 ATGGAGATAATCACCAACAACGCCACCACCACCATAACAAACCCACCAAAATCACCAGAACCCGAATCAGAAACTCCGACCCGGATTCAACCCACAAACACTAAGCCTGTTTCATTCTCCAACGGAGTACTCAAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCGCCGCGATCCCGACGAGCCACCACCACCACCACCTCTCTCTCCTGTAATCGAGTACCAACCTCTCCACCGCCACCACCCTCCACCACCAGCTCCGCCACCTCCTCCGTTCCACCACCACCACCACCGGAGCCCTAACTCCGCCTCACCACCTCCGATCTCCTCTTCCTACTACCCTTCCGCACCGCACATGCTCCTCGCTTTGTCCTCGGGCGGCGGCCTCTCCGTTCCACCGGAAAACACCGCCTTACCAGCCTCCAACCACCACCACCACCACCATCTAAGTTCCCGAAAACGGTTCAGAACGAAGTTCACGCAGGAACAGAAGGAGAAGATGCACGTGTTCGCGGAACGCGTGGGTTGGAAGATTCAGAAGCGAGACGAAGATCTTATCCAGGAATTTTGCCATGAAGTCGGTGTTGATCGTGGCGTTCTCAAAGTTTGGATGCACAATAACAAGAACACGTTTGGAAAAAGAGAAAGAGAACAAGGTAATACTAAGAATGTTCTAGAAGGTCCTGGAATCAACGGTGCTGATGACGACAACAACAACAATAACAAGAGCAATGGTTTGAACGGTGGGATGATGATGATGATGAACGGTGGTGATGGTAGCGGTCATGATGATGATGGTAGCGCTGATGCAAACGGTGCCGGTACTAATGGCTCTTCTTCTTCTTCTTGA 1143 0.3788 MEIITNNATTTITNPPKSPEPESETPTRIQPTNTKPVSFSNGVLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRRDPDEPPPPPPLSPVIEYQPLHRHHPPPPAPPPPPFHHHHHRSPNSASPPPISSSYYPSAPHMLLALSSGGGLSVPPENTALPASNHHHHHHLSSRKRFRTKFTQEQKEKMHVFAERVGWKIQKRDEDLIQEFCHEVGVDRGVLKVWMHNNKNTFGKREREQGNTKNVLEGPGINGADDDNNNNNKSNGLNGGMMMMMNGGDGSGHDDDGSADANGAGTNGSSSSS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02979 380 MobiDBLite consensus disorder prediction 1 40 - -
Aip10g02979 380 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 152 336 - -
Aip10g02979 380 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 152 336 - -
Aip10g02979 380 Gene3D - 237 310 - -
Aip10g02979 380 MobiDBLite consensus disorder prediction 331 346 - -
Aip10g02979 380 MobiDBLite consensus disorder prediction 311 380 - -
Aip10g02979 380 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 250 307 IPR006455 -
Aip10g02979 380 SUPERFAMILY Homeodomain-like 239 311 IPR009057 -
Aip10g02979 380 MobiDBLite consensus disorder prediction 161 188 - -
Aip10g02979 380 Coils Coil 44 46 - -
Aip10g02979 380 MobiDBLite consensus disorder prediction 116 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02979 Aip-Chr10 125994231 125995373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02979 16 46 ZF-HD Transcription Factor Family AT3G28920 80.645 1.89e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02979 - - ahf:112783874 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02979 10 125994231 125995373 Aip04g03279 04 127101809 127103192 PCT