Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02975 ATGGGAAGACCACCATGTTGTGATAAAGAAGGTATCAAGAAAGGTCCTTGGACTCCTGAAGAAGACATCTTATTAGTCTCTTACATTCAAGAACATGGCCCTGGAAATTGGAAAGCTATTCCTTCTAAAACTGGTTTGTTAAGGTGCAGTAAGAGTTGTAGGCTTAGATGGACAAATTACTTAAGGCCAGGAATCAAAAGAGGTAATTTCACAAACCAAGAGGAGAATATGATCATTCACCTTCAAGCTCTACTGGGAAACAGATGGGCTGCAATAGCTTCCTACCTTCCACAAAGAACAGACAATGACATAAAAAATTATTGGAACACCTATCTGAAAAAAAGGCTCAGCAAGAAATTGGAAGAAGAAAAAAAAGATGGGTCTTGTTTGGCAAATAACAATAATGATTTTTCATCTCAGAAGGTTGTTATGCCACGTGGACAGTGGGAAAGAAGGCTCCAAACAGATATCAACATGGCAAAGAAAGCACTCACTCATGCACTCTCACCACAAAACAATAATAATAATAATATTAATATTGAATCCTTATCTTGTTCTTCTTCTTCCAATTCCAATTCTAATTCTTGTTCATCCAATAATAATAATAAAGCAACACAATCTTTAAGCTATGCTTCAAATGCTGATAACATAGCTCGGTTGCTCAAAGGGTGGATGAAGAAGAATAATAATAATGACACTGCTTCTAGCAAGGAGGGCATTTTCGGAACAAAAGTTTTTGGTAGTGAGGAGTGTTTGGAGTCTTCAAATAATACTAATTCATCATTAGAGTTTTCTCAATCAATTTATTCCCAACAAGAAGAGAGCAAGACTGAAGAAATTGGTGAAGTTTTGATGCCTTTCCATTTGCTTGAGAAATGGCTTCTAGATGAGACTAATATTGAGAAATTTATTTAA 915 0.3574 MGRPPCCDKEGIKKGPWTPEEDILLVSYIQEHGPGNWKAIPSKTGLLRCSKSCRLRWTNYLRPGIKRGNFTNQEENMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTYLKKRLSKKLEEEKKDGSCLANNNNDFSSQKVVMPRGQWERRLQTDINMAKKALTHALSPQNNNNNNINIESLSCSSSSNSNSNSCSSNNNNKATQSLSYASNADNIARLLKGWMKKNNNNDTASSKEGIFGTKVFGSEECLESSNNTNSSLEFSQSIYSQQEESKTEEIGEVLMPFHLLEKWLLDETNIEKFI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02975 304 CDD SANT 69 112 IPR001005 -
Aip10g02975 304 SMART sant 13 63 IPR001005 -
Aip10g02975 304 SMART sant 66 114 IPR001005 -
Aip10g02975 304 CDD SANT 16 61 IPR001005 -
Aip10g02975 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip10g02975 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip10g02975 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip10g02975 304 Gene3D - 68 140 - -
Aip10g02975 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Aip10g02975 304 Gene3D - 13 66 - -
Aip10g02975 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aip10g02975 304 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 236 - -
Aip10g02975 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aip10g02975 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip10g02975 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02975 Aip-Chr10 125903410 125906890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02975 1 301 MYB Transcription Factor Family AT5G62470 46.377 4.04e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip10g02975 Myb_DNA-binding 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02975 K09422 - gmx:778078 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02975 10 125903410 125906890 Aip10g02975 10 125903410 125906890 ECH
Aip10g02975 10 125903410 125906890 Aip04g03274 04 126964314 126966215 PCT