Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02973 ATGGGGGAAAGAAATATTGAGATGGAGAATAAGATTGAAGATGAGATGATGCCAGGTTTCAGATTTCACCCAACAGATGAAGAGATTGTTGGTTTTTATCTAAAAAGAAAAATTCAGCAAAAATCTCTTCCTATTGAATTGATCAAGCAAGTTGATATCTATAAAGTGACAAGATGTGGGTTTTGGAAGGCCACTGGAACGGACAGGCCCATTTACTCATCTGAGGCCCAATCCATTATTGGTTTGAAGAAATCACTTGTTTTCTACAGAGGCAGAGCTGCTAAGGGTTTCAAAACTGATTGGATGATGCATGAGTTTAGGCTCCCTTCTCTTTCTTCTGATTCAGCCAAGAAATGCTCTGACAAAACTACCCCTGCTTCTGATTCATGGGCAATATGTAGGATATTCAAGAAAACAAACACAATGTCCATGGCACAAAAAGCCTCATTATCTCATCATCCTTATAATTGGAATCATCATAATCAATTATTTGATGATATACTCACACATCAACAACACCAACACCCTATTATTCCAAACTCCAACAACAACTTCATCTTCTACAATTCCAATTCTACCCTTGAACCCACAAAAGAAATTGATGCTACTACTACTAGTAGCTCCATTGTTATTTCTTCCAACATAGGCCTTCATGAAGATCCAAATCATCATCATTACAATAATAATAGTAGTGGGTTCTCATCTTCTTCAATTATGATGATGCAACCAAACATCATGGCAACCTCAGATGATGATGATTCAGGTGTAATTACAACAATTGCTGGCTTCCCATTCAATTTGCCTCCAAATGATGATGATGCTGCTTGGAATAATAATATTAAGCCTAATACTACTCTGCCATGGGACTACTTATCAGACATGTCCACTACCTATTCCACTAATAAATCTTACACTTAA 918 0.3693 MGERNIEMENKIEDEMMPGFRFHPTDEEIVGFYLKRKIQQKSLPIELIKQVDIYKVTRCGFWKATGTDRPIYSSEAQSIIGLKKSLVFYRGRAAKGFKTDWMMHEFRLPSLSSDSAKKCSDKTTPASDSWAICRIFKKTNTMSMAQKASLSHHPYNWNHHNQLFDDILTHQQHQHPIIPNSNNNFIFYNSNSTLEPTKEIDATTTSSSIVISSNIGLHEDPNHHHYNNNSSGFSSSSIMMMQPNIMATSDDDDSGVITTIAGFPFNLPPNDDDAAWNNNIKPNTTLPWDYLSDMSTTYSTNKSYT 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02973 305 Pfam No apical meristem (NAM) protein 57 108 IPR003441 GO:0003677|GO:0006355
Aip10g02973 305 Pfam No apical meristem (NAM) protein 18 55 IPR003441 GO:0003677|GO:0006355
Aip10g02973 305 Gene3D NAC domain 25 56 IPR036093 GO:0003677|GO:0006355
Aip10g02973 305 Gene3D NAC domain 57 143 IPR036093 GO:0003677|GO:0006355
Aip10g02973 305 ProSiteProfiles NAC domain profile. 1 138 IPR003441 GO:0003677|GO:0006355
Aip10g02973 305 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 55 170 - -
Aip10g02973 305 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 9 55 - -
Aip10g02973 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 55 170 - -
Aip10g02973 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 55 - -
Aip10g02973 305 SUPERFAMILY NAC domain 12 138 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02973 Aip-Chr10 125852631 125854278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02973 1 152 NAC Transcription Factor Family AT1G26870 53.439 1.92e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip10g02973 NAM 9.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02973 - - aip:107621433 562.762