Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02968 ATGGCTGAAGGTGTTAGTGAAGCAAACAATACTAAAGCGTCGCCATCGCCATTGCCACCAGAAGCAGAGAAGAAGAAAGAACAAAGCCTACCATTTTTCAAGCTCTTCTCATTTGCAGACAAGTATGACTACATGCTCATGATCTCTGGAACCATCGGCGCCATTGTTCATGGCTCCTCCATGCCCGTTTTCTTCCTCCTCTTCGGTCAAATGGTCAACGGTTTTGGTAAGAACCAAATGGACCTTAACAAGATGACTCAGGAAGTCTCAAAGTATGCTCTTTACTTTGTGTACCTTGGCCTTGTGGTTTGCATATCATCATATGCAGCAGAAATTTCATGCTGGATGTATAGTGGGGAGAGGCAAGTGAGTACACTAAGGAAGAAGTATTTGGAAGCAGTGCTTAAACAAGATGTAGGTTTCTTTGATACAGATGCAAGAACAGGGGATATTGTTTTCAGTGTCTCAACGGACACACTTCTTGTTCAAGATGCCATCAGTGAGAAGGTTGGGAACTTCATACATTATCTTTCAACTTTTCTGGCTGGACTTGTGGTTGGTTTTGTGTCAGCATGGAGGCTAGCACTTCTAAGTGTTGCCGTGATTCCCGGCATCGCTTTCGCCGGCGGCTTGTATGCTTACACTCTTACCGGCCTTACATCGAAGAGTCGCGAATCCTATGCCAATGCAGGCATCATTGCCGAACAGGTGATTGCTTCTATATTGCATGTATTTCAATTTTCATTGTCTCAAAGAAAGAAAAGTGGTTGGACTAATCAATACGATCTCCAAAATGTAACAGGCCATTGCGCAAGTTCGAACCGATTAGGCCTTGGATGCACCTATGGAATAGCTTGCATGTCATGGGCACTAGTCTTTTGGTACGCCGGCGTTTTCATCCGAAATGGACAGACCGACGGAGGCAAGGCGTTCACGGCTATATTCTCGGCCATTGTTGGTGGAATGAGTTTGGGACAGTCTTTTTCAAATTTAGGCGCCTTTAGTAAAGGCAAAGCAGCCGGATACAAGTTAATGGAGATCATCAAGCAGAAACCAACAATTGTGGAGGATCCTTTGGAAGGCAAGTGCTTGGGAGAGGTTAATGGAAACATTGAATTCAAGGATGTTGGTTTTAGCTATCCCTCGCGGCCGGATGTCATGATCTTTCGCAACTTCTCAATCTTTTTCCCGGCCGGGAAAACAGTGGCGGTTGTAGGTGGTAGTGGATCAGGAAAGAGTACAGTTGTTTCCTTGATTGAAAGGTTCTATGATCCAAATGAAGCAGGTCAAGTTCTGCTTGATAATGTGGACATCAAGACACTGCAACTAAAATGGTTGCGAGATCAAATCGGATTGGTGAATCAAGAACCTGCGCTGTTCGCAACCACCATTCTTGAGAACATACTCTATGGAAAACCTGATGCAACAATGGCTGAAGTGGAAGCAGCAGCTTCTGCTGCAAATGCTCATAGCTTTATTACCTTGCTTCCCAACGGCTATAACACTCAGGTGGGAGAACGAGGAGTGCAATTATCAGGAGGGCAAAAGCAGAGAATTGCAATTGCAAGAGCAATGTTGAAGAATCCAAAGATTCTGCTTTTGGATGAGGCAACAAGTGCTTTAGATGCGGGATCAGAGAGCATTGTTCAAGAGGCACTAGACAGGCTCATGGTGGGAAGAACAACCGTGGTTGTAGCTCATCGTCTGTCAACCATAAGAAACGTTGATACCATCGCCGTCATCCAGCAAGGACAAGTGGTGGAGACAGGAACACACGAGGAACTCATTGCCAAGGCAGGAACCTATGCATCACTAATTAGGTTCCAAGAAATGGTTGGAAATAGGGACTTCTCCAACCCCTCAACTCGCCGGACACGGTCCTCCCGCCTCAGCCATTCCCTGTCTACAAAGTCCTTAAGCCTCCGATCCGGAAGCTTAAGGAACTTGAGCTACCAATACAGCACCGGAGCCGACGGCCGCATAGAAATGATATCCAATGCCGAGACGGATAAGAAGAATCCGGCCCCGGATGGATACTTCCTCCGGCTGCTGAAGATGAATGCCCCCGAATGGCCTTACTCAATCATGGGAGCCGTTGGTTCTGTTCTCTCCGGATTCATTGGGCCAACATTTGCAATTGTGATGAGTAACATGATTGAAGTCTTTTACTATAGAAACTATGCATCCATGGAGAAGAAAACCAAGGAGTATGTGTTTATATACATTGGAGCTGGACTCTATGCGGTTGGTGCATATTTGATTCAACATTACTTTTTCAGTATCATGGGTGAGAACCTCACCACTAGGGTTAGAAGAATGATGCTTGCAGCTATATTGAGGAATGAAGTAGGATGGTTCGATGAGGAGGAACACAACTCAAGCCTGGTGGCAGCAAGGCTTGCAACGGATGCAGCTGATGTCAAGTCTGCCATTGCTGAGAGGATTTCTGTCATTTTACAGAACATGACTTCCCTCCTCACTTCTTTCATTGTTGCTTTCATTGTTGAATGGAGGGTTTCTCTTCTCATTCTTGCTACCTTCCCTCTCCTTGTCCTAGCTAATTTCGCTCAGCAACTTTCCCTAAAAGGTTTTGCTGGAGACACAGCGAAGGCGCATGCAAAAACAAGTATGATTGCTGGGGAAGGAGTGAGCAATATCCGAACCGTTGCAGCATTCAATGCACAGAACAAGATGTTATCGGTCTTCTGCCACGAGCTGCGAGTGCCGCAGATGCGAAGCCTTCGCCGGAGCCAGAGCTCCGGCATCTTGTTCGGCCTCTCGCAGCTCGCGCTTTATGCCTCCGAGGCTCTCATTCTATGGTACGGTGCACATTTGGTCAGCAAAGGAGTTTCAACCTTCTCGAAGGTCATTAAGGTCTTTGTGGTCCTTGTCATAACGGCCAATTCGGTTGCAGAGACCGTTAGCCTCGCCCCGGAGATAATCCGAGGCGGGGAAGCAGTTGGCTCTGTTTTCTCTATCCTCGACCGGCACACCAGGATCGATCCAGACGATCCTGATGCTGATCCGGTCGAGTCAATTCGTGGAGAAATCGAGCTTAGACATGTTGATTTCGCATACCCTTCGAGGCCAGATGTGATGGTTTTCAAGGATCTGAACCTCAGAATTAGGGCAGGCCAAAGCCAAGCCCTCGTCGGAGCGAGCGGATCGGGGAAGAGTTCGGTCATCGCCCTTATCGAGCGGTTCTACGATCCCATAGCCGGGAAAGTCATGGTGGACGGAAAAGACATAAGGAAGCTTAACTTGAAATCCTTGAGGCTCAAGATCGGTTTGGTCCAACAAGAACCGGCATTGTTTGCCGCTTCGATATTCGAAAACATTGCTTATGGAAAGGAGGGCGTGACGGAATCCGAGGTGATTGAGGCAGCTAGAGCTGCCAACGTGCACGCCTTTGTTAGTGGTCTCCCCGAGGGCTACAAAACACCCGTTGGTGAACGGGGCGTGCAGCTCTCGGGTGGCCAGAAACAAAGGATTGCAATTGCTAGGGCTGTCCTTAAGGACCCTACAATATTGCTTCTTGATGAAGCAACAAGTGCACTTGATGCTGAGTCAGAATGTGTGCTACAAGAGGCATTGGAGAGGCTCATGAGGGGGAGGACCACGGTGCTCGTCGCGCACCGGTTGTCCACCATAAGAGGGGTTGATTGCATTGGTGTGGTCCAAGATGGGCGCATTGTGGAACAAGGTAGCCATTCTGAGCTTATAAGCAGGCCTGAGGGTGCATATTCTAGACTCTTGCAACTACAACATCATCACATTTGA 3780 0.4775 MAEGVSEANNTKASPSPLPPEAEKKKEQSLPFFKLFSFADKYDYMLMISGTIGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLNKMTQEVSKYALYFVYLGLVVCISSYAAEISCWMYSGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQVIASILHVFQFSLSQRKKSGWTNQYDLQNVTGHCASSNRLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPLEGKCLGEVNGNIEFKDVGFSYPSRPDVMIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEAGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAAASAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFLRLLKMNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYRNYASMEKKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQMRSLRRSQSSGILFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRHTRIDPDDPDADPVESIRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKEGVTESEVIEAARAANVHAFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHHI 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02968 1259 Pfam ABC transporter transmembrane region 48 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g02968 1259 Pfam ABC transporter transmembrane region 695 966 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g02968 1259 PANTHER BNAA09G02390D PROTEIN 21 1257 - -
Aip10g02968 1259 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 1000 - -
Aip10g02968 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1253 IPR003439 GO:0005524
Aip10g02968 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 608 IPR003439 GO:0005524
Aip10g02968 1259 MobiDBLite consensus disorder prediction 1 25 - -
Aip10g02968 1259 ProSitePatterns ABC transporters family signature. 1156 1170 IPR017871 GO:0005524
Aip10g02968 1259 Gene3D ABC transporter type 1, transmembrane domain 34 985 IPR036640 GO:0005524|GO:0016021
Aip10g02968 1259 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 344 - -
Aip10g02968 1259 Pfam ABC transporter 1036 1184 IPR003439 GO:0005524
Aip10g02968 1259 Pfam ABC transporter 390 539 IPR003439 GO:0005524
Aip10g02968 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 695 982 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g02968 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1007 1255 IPR027417 -
Aip10g02968 1259 Gene3D - 361 610 IPR027417 -
Aip10g02968 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g02968 1259 CDD ABC_MTABC3_MDL1_MDL2 371 609 - -
Aip10g02968 1259 SMART AAA_5 1044 1230 IPR003593 -
Aip10g02968 1259 SMART AAA_5 398 585 IPR003593 -
Aip10g02968 1259 SUPERFAMILY ABC transporter transmembrane region 676 996 IPR036640 GO:0005524|GO:0016021
Aip10g02968 1259 SUPERFAMILY ABC transporter transmembrane region 34 356 IPR036640 GO:0005524|GO:0016021
Aip10g02968 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 609 IPR027417 -
Aip10g02968 1259 CDD ABC_MTABC3_MDL1_MDL2 1017 1255 - -
Aip10g02968 1259 Gene3D - 1007 1258 IPR027417 -
Aip10g02968 1259 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1257 IPR039421 -
Aip10g02968 1259 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02968 Aip-Chr10 125727569 125736484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02968 9 1255 Calmodulin-binding Proteins AT2G36910 52.636 0.0 1312