Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02964 ATGGCGTTCCCTCCTTCTCACTCTTTCATCTTCCATCATGATCATCAACAACCACAACATCACCCTCTCCGTACAACTCCTCCTTCAGCCCCCGCCTTCCCCTCTTTCCCGCCTCACCACCACCACTTTCCAGCAGGAGGAGGTGGTGGTAGCGGTGGAGGCTCTTGGATGAAGCGATCCATGTCGTTTTCAGGCATAGACACCACCAAGAACTGTGGCGGCGGCGCCGGCGCTGACGAGTTAGCGCTACTGCACGGAGACGATGAGCTCTCCGACGACGGATCCCAAATCGGGGAGAAGAAGAAGAGGCTCGGCATGGAGCAGGTGAAGGCTCTGGAGAAGAGCTTCGAGGCCGGCAACAAGCTCGACCCCGAGCGCAAAATGCAGCTGGCCAAAGCCCTTGGGCTTCAGCCGCGCCAGATCGCCATTTGGTTCCAGAACCGCCGTGCAAGGTGGAAGACCAAGCAGCTCGAGAAGGAGTATGAGGTCCTCAAGAAGCAGTTTGATGCCGTTAAGGCCGATAACGACTCCCTCAAAACGCAGAATCAGAAGCTCCACGCTGAGCTAGAAGCTCTAAAGGGTAGTAGGGAATGGTGTGAAAATGGAACAATGATTACCCTAAAGAAAGAAAATGAGGGTTCTTGGAGCAACAATGGAAGTGATAATAGCTCAGATATGAACTTGGATCTTTCAAGAACACCAGTGATGAATAGTCCAGTGTCTTCTTCTCATAATAATAATAATAATAACAATAATAATAATAATAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC 1298 0.3012 MAFPPSHSFIFHHDHQQPQHHPLRTTPPSAPAFPSFPPHHHHFPAGGGGGSGGGSWMKRSMSFSGIDTTKNCGGGAGADELALLHGDDELSDDGSQIGEKKKRLGMEQVKALEKSFEAGNKLDPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFDAVKADNDSLKTQNQKLHAELEALKGSREWCENGTMITLKKENEGSWSNNGSDNSSDMNLDLSRTPVMNSPVSSSHNNNNNNNNNNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02964 432 Coils Coil 147 195 - -
Aip10g02964 432 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 246 IPR045224 GO:0003700
Aip10g02964 432 MobiDBLite consensus disorder prediction 1 57 - -
Aip10g02964 432 CDD homeodomain 100 156 IPR001356 GO:0003677
Aip10g02964 432 Gene3D - 92 163 - -
Aip10g02964 432 SMART HOX_1 98 159 IPR001356 GO:0003677
Aip10g02964 432 MobiDBLite consensus disorder prediction 24 38 - -
Aip10g02964 432 Pfam Homeobox associated leucine zipper 155 194 IPR003106 GO:0006355|GO:0043565
Aip10g02964 432 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 246 - -
Aip10g02964 432 SUPERFAMILY Homeodomain-like 92 157 IPR009057 -
Aip10g02964 432 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Aip10g02964 432 Coils Coil 254 256 - -
Aip10g02964 432 MobiDBLite consensus disorder prediction 210 267 - -
Aip10g02964 432 Pfam Homeodomain 101 153 IPR001356 GO:0003677
Aip10g02964 432 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Aip10g02964 432 MobiDBLite consensus disorder prediction 210 259 - -
Aip10g02964 432 PRINTS Lambda-repressor HTH signature 126 135 IPR000047 GO:0003677
Aip10g02964 432 PRINTS Lambda-repressor HTH signature 135 151 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02964 Aip-Chr10 125492205 125494989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02964 1 227 Homeobox Transcription Factor Family AT5G15150 53.942 6.77e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip10g02964 Homeodomain 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02964 K09338 - gmx:100816097 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02964 10 125492205 125494989 Aip04g03265 04 126818904 126821838 PCT