Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02958 ATGGCGGCTTGCTTGACCTTCACGGTGTCGCAAGATGGAAGCGGCGACTTCTTAACGGTGCAGGACGCCATCGACGCCGTCCCTCTCAGCAACACTCGCCGGACCGTCATTCGCGTGTCGCCGGGAATCTATCTTCAGCCGCTTTATGTCCCTAAGACAAAGAATTTCATCACTCTTGCTGGCCTCACTCCCGAGGATACTCTTCTTACCTGGAACAACACTGCTTCCAAAATCGATCACCATCAACCTGCTAGGGTGATAGGGACAGGGACATTTGGTTGTGGAACTGCAATTGTAGAAGGGGAGGACTTCATTGCTGAGAATATTACTTTTGAGAATTCTTCCCCTCAGGGTTCAGGGCAAGCAGTGGCAATTAGGGTAACAGCAGATCGATGCGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTACTTACACTATGGAAAACAATATTTGAAAGATTGCTATATTGAAGGTAGTGTCGACTTTATCTTTGGCAATAGCACTGCTCTCTTGGAACACTGTCATATTCACTGCAAGTCTGAAGGGTTCATTACTGCACAGAGCCGAAAGTCTTCACAGGAAACAACTGGCTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGAAAAATCGTATGCATATCTTGGACGGCCGTGGGGCCCTTTTGGAAGGGTGGTCTTTGCATACACTTACATGGATCATTGTATAAAGCATGTTGGTTGGGATAACTGGGGAAAAGTTGAGAACGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCAGTCAATCGAGACGAGTAACATGGTGTAGAGAATTGTTGGATGAAGAAGCAGAGCAGTTCCTCATGCATCCTTTCATAGACCCGGATCCCGAAAGGCCTTGGCTTGCTCAAAGAATGGCCTTGAAGGTTCCATATACAGCATAG 954 0.4686 MAACLTFTVSQDGSGDFLTVQDAIDAVPLSNTRRTVIRVSPGIYLQPLYVPKTKNFITLAGLTPEDTLLTWNNTASKIDHHQPARVIGTGTFGCGTAIVEGEDFIAENITFENSSPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQSRKSSQETTGYVFLRCVITGNGEKSYAYLGRPWGPFGRVVFAYTYMDHCIKHVGWDNWGKVENERSACFYEYRCFGPGCSQSRRVTWCRELLDEEAEQFLMHPFIDPDPERPWLAQRMALKVPYTA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02958 317 PANTHER PECTINESTERASE 3 316 - -
Aip10g02958 317 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 316 - -
Aip10g02958 317 Pfam Pectinesterase 8 297 IPR000070 GO:0030599|GO:0042545
Aip10g02958 317 Gene3D - 4 312 IPR012334 -
Aip10g02958 317 ProSitePatterns Pectinesterase signature 2. 160 169 IPR033131 -
Aip10g02958 317 SUPERFAMILY Pectin lyase-like 3 303 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02958 Aip-Chr10 125312269 125316486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02958 8 310 Carbohydrate Esterase AT5G47500 38.658 4.85e-70 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02958 K01051 - gmx:100795636 609.372